View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_94 (Length: 370)
Name: NF0809_low_94
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_94 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 14 - 370
Target Start/End: Original strand, 28457337 - 28457710
Alignment:
| Q |
14 |
atatttctttaaaaaagtcttgtgaattttaaaagcactaacaatattcataatagtgtttcatcaacttaatttaaggtacaaccacaattacgtgacg |
113 |
Q |
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| T |
28457337 |
atatttctttaaaaaagtcttgtgaattttaaaagcactaacaatattcataatagtgtgtcatcaacttaatttaaggtacaacaagaagtacgtgaca |
28457436 |
T |
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| Q |
114 |
caagaaatgaaactggtaacaagaaacaacatctt---tggcatagtttggaagctctcggatccttcttcaatgataggctccaacctttgaa------ |
204 |
Q |
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| T |
28457437 |
caagaaatgaaacggg-aacaagaaacaacatcttctttggcatagtttggaagctctcggatccttcttcaatgatagactccaaccttggaaatttgg |
28457535 |
T |
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| Q |
205 |
---------ttttaggggttatgatgagagcagaagctacctcacggcaattttggatgcttctcatttccatcttccttggcatatagttaatcaatag |
295 |
Q |
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| T |
28457536 |
aacaacattttttaggggttatgatgagagcagaagctacctcacggcaattttggatgcttctcatttccatcttccttggcatataattaatcaatag |
28457635 |
T |
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| Q |
296 |
ttgtttggattaaacattttctgcgtgcaactgcatagactactcttttaaattaagtatgaacggaatggatta |
370 |
Q |
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| T |
28457636 |
ttgtttggattaaatatcttctgcgtgcaactgcatagactactcttttaaattaagtatgaacggaatggatta |
28457710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 108 - 272
Target Start/End: Original strand, 39182247 - 39182428
Alignment:
| Q |
108 |
gtgacgcaagaaatgaaactggtaacaagaaacaacatctt---tggcatagtttggaagctctcggatccttcttcaatgataggctccaacctttgaa |
204 |
Q |
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| T |
39182247 |
gtgacacaagaaatgaaagtgggaacaagaaacaacatcttctttggcatagtatggaagctctcggatccttcttcaatgataggctccaaccttggaa |
39182346 |
T |
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| Q |
205 |
ttttag--------------gggttatgatgagagcagaagctacctcacggcaattttggatgcttctcatttccatcttc |
272 |
Q |
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| T |
39182347 |
atttagaacaacattttttagggttatgatgagagcaaaagctacctcgcggaaattttggatgcttctcatttccatcttc |
39182428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 114 - 210
Target Start/End: Original strand, 33135275 - 33135374
Alignment:
| Q |
114 |
caagaaatgaaactggtaacaagaaacaacatc---tttggcatagtttggaagctctcggatccttcttcaatgataggctccaacctttgaattttag |
210 |
Q |
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| T |
33135275 |
caagaaatgaaagtgggaacaagaaataacatcctctttggcataatttggaagctctcaggtccttcttcaatgataggctccaaccttggaaatttag |
33135374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 33135384 - 33135451
Alignment:
| Q |
205 |
ttttaggggttatgatgagagcagaagctacctcacggcaattttggatgcttctcatttccatcttc |
272 |
Q |
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| T |
33135384 |
ttttaggggttctgatgagagcaggagctacctcaccacaattttggatacctctcatattcatcttc |
33135451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 114 - 210
Target Start/End: Original strand, 40029291 - 40029390
Alignment:
| Q |
114 |
caagaaatgaaactggtaacaagaaacaacat---ctttggcatagtttggaagctctcggatccttcttcaatgataggctccaacctttgaattttag |
210 |
Q |
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| T |
40029291 |
caagaaatgaaagcgggaacaagaaacaacattctctttggcatagtttggaagctcttgggtccttcttcaatgataggctccaaccttggaaatttag |
40029390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 261
Target Start/End: Original strand, 40029400 - 40029456
Alignment:
| Q |
205 |
ttttaggggttatgatgagagcagaagctacctcacggcaattttggatgcttctca |
261 |
Q |
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| T |
40029400 |
ttttaggggttatgatcagagcaggagctacctcaccacaattttgaatgcctctca |
40029456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 272
Target Start/End: Complemental strand, 32354473 - 32354409
Alignment:
| Q |
208 |
taggggttatgatgagagcagaagctacctcacggcaattttggatgcttctcatttccatcttc |
272 |
Q |
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| T |
32354473 |
taggggttatgaggagagcaggtgcaacctcaccacaattttggatgcctttcatttccatcttc |
32354409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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