View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_95 (Length: 369)
Name: NF0809_low_95
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_95 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 30 - 360
Target Start/End: Original strand, 4093972 - 4094302
Alignment:
| Q |
30 |
caattgatatggtttcattgaagaagcttccacaactctaagtctgatattcaagaagctaagaccaagtggccatccaataaccatttcatcattctga |
129 |
Q |
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| T |
4093972 |
caattgatatggtttcattgaagaagcttccacaactctaagtctgatattcaagaagctaagaccaagtggccatccaataaccatttcatcattctga |
4094071 |
T |
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| Q |
130 |
gaagacatgacagtaattgttttaagcaatacattaacaatttcaataaatatgtatgtatgtggataaagaatcagcgccttaatcacaacaagagtgt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
4094072 |
gaagacatgacagtaattgttttaagcaatacattaacaatttcaataaatatgtatgtaggtggataaagaatcagcaccttaatcacaacaagagtgt |
4094171 |
T |
|
| Q |
230 |
ccataatatggatcaagttggtaagatattttgtgtgattttgtctaaaaattgcaaggttaagaagagttaagacaactcttgcatgtgtacatcaact |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4094172 |
ccataatatggatcaagttggtaagatattttgtgtgactttgtctaaaaattgcaaggttaagaagagttaagacaactcttgcatgtgtacatcaact |
4094271 |
T |
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| Q |
330 |
aggttccacttttagtttccatcagaataat |
360 |
Q |
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|||||||||||||||||||||||||| |||| |
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| T |
4094272 |
aggttccacttttagtttccatcagagtaat |
4094302 |
T |
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