View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0809_low_97 (Length: 364)
Name: NF0809_low_97
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_97 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 8 - 336
Target Start/End: Original strand, 15493657 - 15493985
Alignment:
| Q |
8 |
tgagatgaatgcaaatgcgtctgatattgcaaacaccaagaatgatggtttcttcaagtagtttggttttcctgtgtcatcggtaccacctggtaaagta |
107 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15493657 |
tgagataaatgcaaatgtgtctgatattgcaaacaccaagaatgatggtttcttcaagtagtttggttttcctgtgtcatcggtaccacctggtaaagta |
15493756 |
T |
|
| Q |
108 |
gttgcagcagcgaacactccagtagcaatgactgttgaaattagcatacaagactcggcagnnnnnnncatccaagactctgcatcttcccttagttttt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
15493757 |
gttgcagcagcgaacactccagtagcaatgactgttgaaattagcatacaagactcggcagtttttttcatccaagactctgcatcttcccttagttttt |
15493856 |
T |
|
| Q |
208 |
catgctcatttgagaacagttcttctgcagtcatgtctttggagttttttgacttaatttgtgctggcaacattatcttctttactttctatcatacgaa |
307 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15493857 |
catgctcattcgagaacagttcttctgcagtcatgtctttggagttttttgacttaatttgtgctggcaacattatcttctttactttctatcatacgaa |
15493956 |
T |
|
| Q |
308 |
aacatatatacagatgttaagtaaaatat |
336 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
15493957 |
aacatatatacagatgttaagtaaaatat |
15493985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 309
Target Start/End: Original strand, 15517487 - 15517784
Alignment:
| Q |
12 |
atgaatgcaaatgcgtctgatattgcaaacaccaagaatgatggtttcttcaagtagtttggttttcctgtgtcatcggtaccacctggtaaagtagttg |
111 |
Q |
| |
|
||||| ||| |||| ||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||| || |
|
|
| T |
15517487 |
atgaacgcagatgcatctgatattgcaaaccccaaaaatgatggtttcttcaaaaagtttggttttcctgtgttatcgataccacctggtaaagtaactg |
15517586 |
T |
|
| Q |
112 |
cagcagcgaacactccagtagcaatgactgttgaaattagcatacaagactcggcagnnnnnnncatccaagactctgcatcttcccttagtttttcatg |
211 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
15517587 |
cagcagcgaacactccggtagcaatgactgttgaaattagcatacacgactccgcagtttttttcatccaagactctgcatcttcccttagtttttcatg |
15517686 |
T |
|
| Q |
212 |
ctcatttgagaacagttcttctgcagtcatgtctttggagttttttgacttaatttgtgctggcaacattatcttctttactttctatcatacgaaaa |
309 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||||| |||||||| ||||| |||| ||||||||||||||| |||||||||| ||||| |
|
|
| T |
15517687 |
ctcatttgagaacagttcttctgcagtcacgcctttggagtttttcgacttaatctgtgcgggcagcattatcttctttacattctatcatatgaaaa |
15517784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 12 - 309
Target Start/End: Original strand, 15534000 - 15534297
Alignment:
| Q |
12 |
atgaatgcaaatgcgtctgatattgcaaacaccaagaatgatggtttcttcaagtagtttggttttcctgtgtcatcggtaccacctggtaaagtagttg |
111 |
Q |
| |
|
||||||||| |||| |||||| ||||||| |||||||||| || |||| |||| |||||||||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
15534000 |
atgaatgcagatgcatctgatgttgcaaataccaagaatggtgttttcgtcaactagtttggttttccggtgtcatcggtaccacctggtaaagtaactg |
15534099 |
T |
|
| Q |
112 |
cagcagcgaacactccagtagcaatgactgttgaaattagcatacaagactcggcagnnnnnnncatccaagactctgcatcttcccttagtttttcatg |
211 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||| |||||||||||| |||| |
|
|
| T |
15534100 |
cagcagcgaacactccggtagcaatgactgttgaaattagcatacatgactccgcagtttttttcatccaagactctgcatcctcccttagttttgcatg |
15534199 |
T |
|
| Q |
212 |
ctcatttgagaacagttcttctgcagtcatgtctttggagttttttgacttaatttgtgctggcaacattatcttctttactttctatcatacgaaaa |
309 |
Q |
| |
|
|||||||||||| | |||| |||||||| | || |||||||| |||| ||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
15534200 |
ctcatttgagaataactcttgtgcagtcaagcgttcagagtttttcaactttatttgtgctggcaacattatcttctttacattctatcatatgaaaa |
15534297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 8 - 336
Target Start/End: Original strand, 15654449 - 15654773
Alignment:
| Q |
8 |
tgagatgaatgcaaatgcgtctgatattgcaaacaccaagaatgatggtttcttcaagtagtttggttttcctgtgtcatcggtaccacctggtaaagta |
107 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||| ||| ||||| |||| ||||||||| | |||||||||||| |||||||||||| |
|
|
| T |
15654449 |
tgagatgaatgcagatgcatctgatattgcaaacaccaagaatgatgttttattcaaatagtgtggttttccagagtcatcggtaccgcctggtaaagta |
15654548 |
T |
|
| Q |
108 |
gttgcagcagcgaacactccagtagcaatgactgttgaaattagcatacaagactcggcagnnnnnnncatccaagactctgcatcttcccttagttttt |
207 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||||||| |||||| |||||||||| ||| |||||| ||| |
|
|
| T |
15654549 |
gttgcagcagcaaacactccggtagcaatgacagttgaaattagcatgcaagactcggcagtttttttcatccacgactctgcattttctcttagtgttt |
15654648 |
T |
|
| Q |
208 |
catgctcatttgagaacagttcttctgcagtcatgtctttggagttttttgacttaatttgtgctggcaacattatcttctttactttctatcatacgaa |
307 |
Q |
| |
|
|||||||| ||||||| || |||| |||||| | | ||| |||||| | ||| || ||||| ||||||||||||||||||||||||| ||| | ||| |
|
|
| T |
15654649 |
catgctcaattgagaatagctcttgtgcagtaaagccttcagagtttctcatctttatctgtgcaggcaacattatcttctttactttctgtcacatgaa |
15654748 |
T |
|
| Q |
308 |
aacatatatacagatgttaagtaaaatat |
336 |
Q |
| |
|
|| ||||||| |||||||||||||| |
|
|
| T |
15654749 |
aatgtatatac----gttaagtaaaatat |
15654773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 8 - 297
Target Start/End: Original strand, 15645397 - 15645686
Alignment:
| Q |
8 |
tgagatgaatgcaaatgcgtctgatattgcaaacaccaagaatgatggtttcttcaagtagtttggttttcctgtgtcatcggtaccacctggtaaagta |
107 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||| ||| ||||| |||| ||||||||| | |||||||||||| |||||||||||| |
|
|
| T |
15645397 |
tgagatgaatgcagatgcatctgatattgcaaacaccaagaatgatgttttattcaaatagtgtggttttccagagtcatcggtaccgcctggtaaagta |
15645496 |
T |
|
| Q |
108 |
gttgcagcagcgaacactccagtagcaatgactgttgaaattagcatacaagactcggcagnnnnnnncatccaagactctgcatcttcccttagttttt |
207 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||||| | |||||| |||||||||| ||| |||||| ||| |
|
|
| T |
15645497 |
gttgcagcagcaaacactccggtagcaatgacagttgaaattagcatgcaagactcggccgtttttttcatccacgactctgcattttctcttagtgttt |
15645596 |
T |
|
| Q |
208 |
catgctcatttgagaacagttcttctgcagtcatgtctttggagttttttgacttaatttgtgctggcaacattatcttctttactttct |
297 |
Q |
| |
|
|||||||| ||||||| || |||| |||||| | | ||| |||||| | ||| || ||||| ||||||||||||||||||||||||| |
|
|
| T |
15645597 |
catgctcaattgagaatagctcttgtgcagtaaagccttcagagtttctcatctttatctgtgcaggcaacattatcttctttactttct |
15645686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 8 - 336
Target Start/End: Original strand, 15624772 - 15625096
Alignment:
| Q |
8 |
tgagatgaatgcaaatgcgtctgatattgcaaacaccaagaatgatggtttcttcaagtagtttggttttcctgtgtcatcggtaccacctggtaaagta |
107 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||| |||| ||||||||| | ||||||||||| |||||||||||| |
|
|
| T |
15624772 |
tgagatgaatgcaaatgcatctgatattgcaaacaccaagaatgatgttttattcaaatagtgtggttttccagaatcatcggtaccgcctggtaaagta |
15624871 |
T |
|
| Q |
108 |
gttgcagcagcgaacactccagtagcaatgactgttgaaattagcatacaagactcggcagnnnnnnncatccaagactctgcatcttcccttagttttt |
207 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||||||| |||||| |||||||| | ||| |||||| ||| |
|
|
| T |
15624872 |
gttgcagcagcaaacactccggtagcaatgacagttgaaattagcatgcaagactcggcagtttttttcatccacgactctgcgttttctcttagtgttt |
15624971 |
T |
|
| Q |
208 |
catgctcatttgagaacagttcttctgcagtcatgtctttggagttttttgacttaatttgtgctggcaacattatcttctttactttctatcatacgaa |
307 |
Q |
| |
|
|||||||| ||||||| || |||| ||| || | | ||| |||||| | ||| || ||| | ||||||||||||||||||||||||| ||| | ||| |
|
|
| T |
15624972 |
catgctcaattgagaatagctcttgtgctgtaaagccttcagagtttctcatctttatctgtccaggcaacattatcttctttactttctgtcacatgaa |
15625071 |
T |
|
| Q |
308 |
aacatatatacagatgttaagtaaaatat |
336 |
Q |
| |
|
|| ||||| |||||||||||||||| |
|
|
| T |
15625072 |
aatgtatat----atgttaagtaaaatat |
15625096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 37 - 309
Target Start/End: Original strand, 15601209 - 15601481
Alignment:
| Q |
37 |
caaacaccaagaatgatggtttcttcaagtagtttggttttcctgtgtcatcggtaccacctggtaaagtagttgcagcagcgaacactccagtagcaat |
136 |
Q |
| |
|
|||||||||| ||||||||||||||||| || ||||||||||||||||||||| |||| ||||||| ||||||||||||||| |||||||| |||||||| |
|
|
| T |
15601209 |
caaacaccaaaaatgatggtttcttcaaataatttggttttcctgtgtcatcgataccgcctggtacagtagttgcagcagcaaacactccggtagcaat |
15601308 |
T |
|
| Q |
137 |
gactgttgaaattagcatacaagactcggcagnnnnnnncatccaagactctgcatcttcccttagtttttcatgctcatttgagaacagttcttctgca |
236 |
Q |
| |
|
||| | ||||||||||||||||||||| || | |||||| |||||||||| ||| |||||||||| |||||| |||||||| | ||||| |||| |
|
|
| T |
15601309 |
gacggctgaaattagcatacaagactctgcggttttcttcatccatgactctgcattttctcttagtttttgatgctcttttgagaagacttcttgtgca |
15601408 |
T |
|
| Q |
237 |
gtcatgtctttggagttttttgacttaatttgtgctggcaacattatcttctttactttctatcatacgaaaa |
309 |
Q |
| |
|
|| | | ||| |||||| | || ||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
15601409 |
gtaaggccttcagagtttctcatgtttatttgtgctggcagcattatcttctttactttctatcatatgaaaa |
15601481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4734 times since January 2019
Visitors: 5752