View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0809_low_99 (Length: 361)
Name: NF0809_low_99
Description: NF0809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0809_low_99 |
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| [»] scaffold0179 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 122 - 246
Target Start/End: Complemental strand, 893434 - 893309
Alignment:
| Q |
122 |
gaagtacggatgagagccgctacaatnnnnnnn-gacggtagaaaagagagtaaaggttgtgatggaaacggtgcatcaggccggcgcaaggccagccaa |
220 |
Q |
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| T |
893434 |
gaagtacggatgagagccgctacaataaaaaaaagacggtagaaaagagagtaaaggttgtgatggaaacggtgcatcaggccggcgcaaggccagccaa |
893335 |
T |
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| Q |
221 |
cagtgaaatagcagttgacatgtacc |
246 |
Q |
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|||||||||||||||||||||||||| |
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| T |
893334 |
cagtgaaatagcagttgacatgtacc |
893309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 155 - 263
Target Start/End: Original strand, 23974 - 24082
Alignment:
| Q |
155 |
gacggtagaaaagagagtaaaggttgtgatggaaacggtgcatcaggccggcgcaaggccagccaacagtgaaatagcagttgacatgtaccatggtgta |
254 |
Q |
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| T |
23974 |
gacgggagaaaagagagtaaaggttgtgatggaaacggtgcatcaaaccgacgcaaggccaacaaaaagtgaaagagcagttgacatgtaccatggtgta |
24073 |
T |
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| Q |
255 |
ggcaggacc |
263 |
Q |
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| T |
24074 |
ggcaggacc |
24082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 51092895 - 51092947
Alignment:
| Q |
163 |
aaaagagagtaaaggttgtgatggaaacggtgcatcaggccggcgcaaggcca |
215 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
51092895 |
aaaagagatgaaaggttgtgatggaaacagtgcatcaggccggcgcgaggcca |
51092947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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