View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0810_high_1 (Length: 985)
Name: NF0810_high_1
Description: NF0810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0810_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 421; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 104 - 536
Target Start/End: Original strand, 13518564 - 13518996
Alignment:
| Q |
104 |
tcttttctaaatttagggggaaaattatatagagaacaagaaaaaacagaagtaaaaacatggttttagatgcagttaggaaaatatggtgataaggttg |
203 |
Q |
| |
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|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13518564 |
tcttttataaatttaggggaaaaattatatagagaacaagaaaaaacagaagtaaaaacatggttttagatgcagttaggaaaatatggtgataaggttg |
13518663 |
T |
|
| Q |
204 |
tgatgccacaatttaataccatgagtaatagaatcaaaagcatagttttcaagatctaaatgtggaagtaatagtacctgaagattgttgtatctgttga |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13518664 |
tgatgccacaatttaataccatgagtaatagaatcaaaagcatagttttcaagatctaaatgtggaagtaatagtacctgaagattgttgtatctgttga |
13518763 |
T |
|
| Q |
304 |
aagttttagagcacacaggacatgagaattgtgtaggaccaatgagaatttgagaaggtgttggaatccaatactgacccttgttattcaatttatccaa |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13518764 |
aagttttagagcacacaggacatgagaattgtgtaggaccaatgagaatttgagaaggtgttggaatccaatactgacccttgttattcaatttatccaa |
13518863 |
T |
|
| Q |
404 |
aggtagttgttcagaaatcatattaacttcctctttttcagccatttcgatgcaatttgatgagaccatccttgatccaagatcagaagaagaattacta |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13518864 |
aggtagttgttcagaaatcatattaacttcctctttttcagccatttctatgcaatttgatgagaccatccttgatccaagatcagaagaagaattacta |
13518963 |
T |
|
| Q |
504 |
ggaagccctatttgtagtgcaacagtaacactt |
536 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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|
| T |
13518964 |
ggaagccctatttgtagtgcaacagtaacactt |
13518996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 104 - 536
Target Start/End: Original strand, 13608097 - 13608529
Alignment:
| Q |
104 |
tcttttctaaatttagggggaaaattatatagagaacaagaaaaaacagaagtaaaaacatggttttagatgcagttaggaaaatatggtgataaggttg |
203 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13608097 |
tcttttataaatttaggggaaaaattatatagagaacaagaaaaaacagaagtaaaaacatggttttagatgcagttaggaaaatatggtgataaggttg |
13608196 |
T |
|
| Q |
204 |
tgatgccacaatttaataccatgagtaatagaatcaaaagcatagttttcaagatctaaatgtggaagtaatagtacctgaagattgttgtatctgttga |
303 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13608197 |
tgatgccacaatttaataccatgagtaatagaatcaaaagcatagttttcaagatctaaatgtggaagtaatagtacctgaagattgttgtatctgttga |
13608296 |
T |
|
| Q |
304 |
aagttttagagcacacaggacatgagaattgtgtaggaccaatgagaatttgagaaggtgttggaatccaatactgacccttgttattcaatttatccaa |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13608297 |
aagttttagagcacacaggacatgagaattgtgtaggaccaatgagaatttgagaaggtgttggaatccaatactgacccttgttattcaatttatccaa |
13608396 |
T |
|
| Q |
404 |
aggtagttgttcagaaatcatattaacttcctctttttcagccatttcgatgcaatttgatgagaccatccttgatccaagatcagaagaagaattacta |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13608397 |
aggtagttgttcagaaatcatattaacttcctctttttcagccatttctatgcaatttgatgagaccatccttgatccaagatcagaagaagaattacta |
13608496 |
T |
|
| Q |
504 |
ggaagccctatttgtagtgcaacagtaacactt |
536 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
13608497 |
ggaagccctatttgtagtgcaacagtaacactt |
13608529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 565 - 682
Target Start/End: Original strand, 13519028 - 13519145
Alignment:
| Q |
565 |
gattatatccatgtctttccattctcttgtcttctaattcatcttctattgtttgagtattaaaaatgtttgagggttcattttgttgttgatgatttat |
664 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13519028 |
gattatatccatgtgtttccattctcttgtcttctaattcatcttctattgtttgagtattaaaaatgtttgagggttcattttgttgttgatgatttat |
13519127 |
T |
|
| Q |
665 |
gaggcttagtttgttaat |
682 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
13519128 |
gaggcttagtttgttaat |
13519145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 565 - 682
Target Start/End: Original strand, 13608561 - 13608678
Alignment:
| Q |
565 |
gattatatccatgtctttccattctcttgtcttctaattcatcttctattgtttgagtattaaaaatgtttgagggttcattttgttgttgatgatttat |
664 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13608561 |
gattatatccatgtgtttccattctcttgtcttctaattcatcttctattgtttgagtattaaaaatgtttgagggttcattttgttgttgatgatttat |
13608660 |
T |
|
| Q |
665 |
gaggcttagtttgttaat |
682 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
13608661 |
gaggcttagtttgttaat |
13608678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 801 - 915
Target Start/End: Original strand, 13519258 - 13519372
Alignment:
| Q |
801 |
tgatgatgagggttaaggagcatgaagttgaaccattcatcaaaaagatttgattgaggatctgtcatagtgtgaatgttagtttgatattgtaaaggct |
900 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13519258 |
tgatgatgagggttaaggagcatgaagttgaaccattcatcaaaaagatttgattgaggatctgtcatagtgtgaatgttagtttgatattgtaaaggct |
13519357 |
T |
|
| Q |
901 |
atattattggagatg |
915 |
Q |
| |
|
|||||||||| |||| |
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|
| T |
13519358 |
atattattggtgatg |
13519372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 801 - 915
Target Start/End: Original strand, 13608791 - 13608905
Alignment:
| Q |
801 |
tgatgatgagggttaaggagcatgaagttgaaccattcatcaaaaagatttgattgaggatctgtcatagtgtgaatgttagtttgatattgtaaaggct |
900 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13608791 |
tgatgatgagggttaaggagcatgaagttgaaccattcatcaaaaagatttgattgaggatctgtcatagtgtgaatgttagtttgatattgtaaaggct |
13608890 |
T |
|
| Q |
901 |
atattattggagatg |
915 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
13608891 |
atattattggtgatg |
13608905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 288 - 389
Target Start/End: Original strand, 21038367 - 21038468
Alignment:
| Q |
288 |
ttgttgtatctgttgaaagttttagagcacacaggacatgagaattgtgtaggaccaatgagaatttgagaaggtgttggaatccaatactgacccttgt |
387 |
Q |
| |
|
||||||||||||||||| ||||| |||| |||||||| |||||||||||||||||||| ||||| |||||||| || || ||||||||||||||||||| |
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|
| T |
21038367 |
ttgttgtatctgttgaaggttttgcagcaaacaggacaagagaattgtgtaggaccaataagaatctgagaaggagtagggatccaatactgacccttgt |
21038466 |
T |
|
| Q |
388 |
ta |
389 |
Q |
| |
|
|| |
|
|
| T |
21038467 |
ta |
21038468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 288 - 389
Target Start/End: Complemental strand, 36568561 - 36568460
Alignment:
| Q |
288 |
ttgttgtatctgttgaaagttttagagcacacaggacatgagaattgtgtaggaccaatgagaatttgagaaggtgttggaatccaatactgacccttgt |
387 |
Q |
| |
|
||||| ||||| ||||||||||| ||||| ||||| || ||||| || || ||||||||||||||||||||||| || || |||||||| || || |||| |
|
|
| T |
36568561 |
ttgttatatctattgaaagttttggagcaaacagggcaagagaactgagttggaccaatgagaatttgagaaggagtagggatccaatattgtcctttgt |
36568462 |
T |
|
| Q |
388 |
ta |
389 |
Q |
| |
|
|| |
|
|
| T |
36568461 |
ta |
36568460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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