View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0810_high_16 (Length: 433)
Name: NF0810_high_16
Description: NF0810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0810_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 3e-86; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 28 - 215
Target Start/End: Original strand, 28940688 - 28940874
Alignment:
| Q |
28 |
catctttgttacaacataataactcgtaactacagacacataattatatgcnnnnnnngacataatcataatagaaagaatatattttgatatatgtggg |
127 |
Q |
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| T |
28940688 |
catctttgttacaacataataactcgtaactacagacacataattatatgctttttt-gacataatcataatagaaagaatatattttgatatatgtggg |
28940786 |
T |
|
| Q |
128 |
tgaaagatatgaaactatcaatgtgtttggaatcacggtcattataaaactataaccagaagcttcatattagcatgttgcatgtcgc |
215 |
Q |
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| T |
28940787 |
tgaaagatatgaaactatcaatgtgtttggaatcacggtcattataaaactataaccagaagcttcatattagcatgttgcatgtcgc |
28940874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 366 - 425
Target Start/End: Original strand, 28942317 - 28942376
Alignment:
| Q |
366 |
ttcttccaataacaatggcagagacgtaagtaaaatcagaatcatcatctggttcatctc |
425 |
Q |
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| T |
28942317 |
ttcttccaataacaatggcagagacacaagtaaaatcagaatcatcatctggttcatctc |
28942376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 257
Target Start/End: Original strand, 28940884 - 28940931
Alignment:
| Q |
210 |
tgtcgctggatctagcattttccaggttttattgataagtctgaatta |
257 |
Q |
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| T |
28940884 |
tgtcgctggttctagcattttccaagttttattgataagtctgaatta |
28940931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 145
Target Start/End: Original strand, 30189364 - 30189410
Alignment:
| Q |
99 |
tagaaagaatatattttgatatatgtgggtgaaagatatgaaactat |
145 |
Q |
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| T |
30189364 |
tagaaagaatatattttgatataggtgggagaaagatatgtaactat |
30189410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 93 - 195
Target Start/End: Original strand, 37195965 - 37196067
Alignment:
| Q |
93 |
tcataatagaaagaatatattttgatatatgtgggtgaaagatatgaaactatcaatgtgtttggaatcacggtcattataaaactataaccagaagctt |
192 |
Q |
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||||| ||||||||||||||| |||||| |||| ||||||||||| ||||| | |||||||||||||||||||||| ||||||| || | |||||| |
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| T |
37195965 |
tcatagtagaaagaatatattctgatattggtggctgaaagatatgttactatgagtgtgtttggaatcacggtcattgctaaactatgactaaaagctt |
37196064 |
T |
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| Q |
193 |
cat |
195 |
Q |
| |
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||| |
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|
| T |
37196065 |
cat |
37196067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 18262730 - 18262786
Alignment:
| Q |
103 |
aagaatatattttgatatatgtgggtgaaagatatgaaactatcaatgtgtttggaa |
159 |
Q |
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||||||||||||||||||| || || |||||||||| ||||||| ||| ||||||| |
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| T |
18262730 |
aagaatatattttgatataggtaggagaaagatatgtaactatccgtgtctttggaa |
18262786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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