View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0810_high_3 (Length: 620)
Name: NF0810_high_3
Description: NF0810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0810_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 473
Target Start/End: Complemental strand, 53620970 - 53620515
Alignment:
| Q |
18 |
gacacatgagccaagagttacacaatagccatgtgaataaaccacatagaaaaatgtaagctcgtctagattaaaggttggataacttaactaataacta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
53620970 |
gacacatgagccaagagttacacaatagccatgtgaataaaccatatagaaaaatgtaagctcgtct-gattaaaggtttgataacttaactaataacta |
53620872 |
T |
|
| Q |
118 |
gttcaaactaatgaattagaagttggagatcttaggtctaaacctaggtgnnnnnnnnnnnntaatctaacatatcgcttagaagttggtcaccatattt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
53620871 |
gttcaaactaatgaattagaagttggagatcttaggtctaaacttgggtgaaaaataaaaaataatctaacatattgcttagaagttggtcaccatattt |
53620772 |
T |
|
| Q |
218 |
ctggtcattcacactattggtccttattttagaattttgaacataaaaatggtgatatatcatatttgaattgaggtctttaaannnnnnnncaaataat |
317 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||| |
|
|
| T |
53620771 |
ctggtcactcacactattggtccttattttagaattttgaacataaaaatggtgatatatcatatttgaattgagatctttaattttttttttaaacaat |
53620672 |
T |
|
| Q |
318 |
tacataggtattgatcattcttgatgaacatataacacgtcatttaaaatatatcacataattgtttttaagtacaagaattaataattatgcaaacaaa |
417 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53620671 |
tacatagatattgatcattcttgatgaacatataacacgtcatttaaaatatattacataattgtttttaagtacaagaattaataattatgcaaacaaa |
53620572 |
T |
|
| Q |
418 |
gtaata-tatttttttaaatatatgaaaacaaagtaaatatctacttatgcttacac |
473 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53620571 |
gtaatattttttttttaaatatatgaaaacaaagtaaatatctacttatgcttacac |
53620515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 491 - 615
Target Start/End: Complemental strand, 53620488 - 53620364
Alignment:
| Q |
491 |
gaggcttgtattacaaatgacattggaatccgagagattgcctttgtcatgttcacaggtggtgcactgagcaggctggggattacggtttagcagctca |
590 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53620488 |
gaggcttgtattacaaatgacattggaatccgagagattgcctttgtcatgttcacaggtggtgcactgagcaggctggggattacggtttagcagctca |
53620389 |
T |
|
| Q |
591 |
cggttgggtctcttgggtatgctct |
615 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
53620388 |
cggttgggtctcttgggtatgctct |
53620364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 251 - 291
Target Start/End: Original strand, 3991393 - 3991433
Alignment:
| Q |
251 |
attttgaacataaaaatggtgatatatcatatttgaattga |
291 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||| |||||| |
|
|
| T |
3991393 |
attttaaacttaaaaatggtgatatatcatatttcaattga |
3991433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 970 times since January 2019
Visitors: 5821