View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0810_high_34 (Length: 256)
Name: NF0810_high_34
Description: NF0810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0810_high_34 |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 45830474 - 45830311
Alignment:
| Q |
1 |
gtaatttgtaggatttagaattagccaacttctcatgatttttt--caaagcacatggttcaggcatgaaataagctacttcggtgaagtttctaagaaa |
98 |
Q |
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| T |
45830474 |
gtaatttgtaggatttagaattagccaaattctcatgattttttttcaaagcacatggttcaggcatgaaataagctacttcggtgaagtttctaagaaa |
45830375 |
T |
|
| Q |
99 |
atctaatgatactaagtaattaagcatctcaacacagttcagagccatgaatattggagttaag |
162 |
Q |
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| T |
45830374 |
atttaatgatactaagtaattaagcatctcaacatagttcagagccatgaatattggagttaag |
45830311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 162
Target Start/End: Original strand, 48621724 - 48621864
Alignment:
| Q |
5 |
tttgtaggatttagaattagccaacttctcatgatttt--ttcaaagcacatggttcaggcatgaaataagctacttcggtgaagtttctaagaaaatct |
102 |
Q |
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||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||| ||||| ||| |
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| T |
48621724 |
tttgtaggatttagaattagccaacttctcaggattttttttcaaagcacatggttcaggcatgaaattagctacttcagtgaaattt------------ |
48621811 |
T |
|
| Q |
103 |
aatgatactaagtaattaagcatctcaacacagttcagagccatgaatattggagttaag |
162 |
Q |
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| T |
48621812 |
-------ctaagtaattaagcatctcaacacagttcagagccatgaatattggagttaag |
48621864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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