View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0810_high_37 (Length: 251)
Name: NF0810_high_37
Description: NF0810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0810_high_37 |
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| [»] chr4 (6 HSPs) |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 55706169 - 55705928
Alignment:
| Q |
10 |
aagaatatatccctctacaaagaatcgagttgatcattcacagatcctggaatggtgtaggcagatggatatccatccaaattctaaaacatggtccatc |
109 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55706169 |
aagaaaatatccctctacaaagaatcgagttgatcattcacagatcctggaatggtgtaggcagatggatatccatccaaattctaaaacatggtccatc |
55706070 |
T |
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| Q |
110 |
agaatgtgctaagtccatcagatcttgagagctccacaacaataacctctctgttttgaggtatattagctttcaattttgcaatagcaatagcacgcga |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
55706069 |
agaatgtgctaagtccatcagatcttgagagctccacaacaataacctctctgttttgaggtatattagctttcaattttgtaatagcaatagcacgcga |
55705970 |
T |
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| Q |
210 |
tatcccaccaatagcatcaaccaaaccatgagatgctgcgtc |
251 |
Q |
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| T |
55705969 |
tatcccaccaatagcatcaaccaaaccatgagatgctgcgtc |
55705928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 153 - 248
Target Start/End: Original strand, 45876736 - 45876831
Alignment:
| Q |
153 |
aacctctctgttttgaggtatattagctttcaattttgcaatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccatgagatgctgc |
248 |
Q |
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| T |
45876736 |
aacctgtctgtcttgaggtatattagctttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccatgggatgctgc |
45876831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 134 - 251
Target Start/End: Complemental strand, 47293620 - 47293503
Alignment:
| Q |
134 |
ttgagagctccacaacaataacctctctgttttgaggtatattagctttcaattttgcaatagcaatagcacgcgatatcccaccaatagcatcaaccaa |
233 |
Q |
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| T |
47293620 |
ttgagcgctccacaagagtgacctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaa |
47293521 |
T |
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| Q |
234 |
accatgagatgctgcgtc |
251 |
Q |
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|||||||||| ||||||| |
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| T |
47293520 |
accatgagatactgcgtc |
47293503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 134 - 251
Target Start/End: Complemental strand, 54304388 - 54304271
Alignment:
| Q |
134 |
ttgagagctccacaacaataacctctctgttttgaggtatattagctttcaattttgcaatagcaatagcacgcgatatcccaccaatagcatcaaccaa |
233 |
Q |
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| T |
54304388 |
ttgagagttcaacaagagtaacctcactattttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaa |
54304289 |
T |
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| Q |
234 |
accatgagatgctgcgtc |
251 |
Q |
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||| |||||| |||||| |
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| T |
54304288 |
accgagagatgttgcgtc |
54304271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 132 - 243
Target Start/End: Original strand, 56208510 - 56208621
Alignment:
| Q |
132 |
tcttgagagctccacaacaataacctctctgttttgaggtatattagctttcaattttgcaatagcaatagcacgcgatatcccaccaatagcatcaacc |
231 |
Q |
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|||||||| ||||||||| |||| | | ||| |||||||||| ||| ||||||||||| |||||||||||||| |||| ||||||||||||||||||| |
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| T |
56208510 |
tcttgagatgtccacaacagtaacatgtttgtcttgaggtataccagccttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaacc |
56208609 |
T |
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| Q |
232 |
aaaccatgagat |
243 |
Q |
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|||||| ||||| |
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| T |
56208610 |
aaaccaagagat |
56208621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 165 - 248
Target Start/End: Original strand, 45858817 - 45858900
Alignment:
| Q |
165 |
ttgaggtatattagctttcaattttgcaatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccatgagatgctgc |
248 |
Q |
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|||||||||||| || |||||||| || |||||||||||||| |||| |||||||||||||||||||| |||||||||| |||| |
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| T |
45858817 |
ttgaggtatattggccttcaatttggctatagcaatagcacgtgatagcccaccaatagcatcaaccagaccatgagatactgc |
45858900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 152 - 251
Target Start/End: Complemental strand, 35854688 - 35854589
Alignment:
| Q |
152 |
taacctctctgttttgaggtatattagctttcaattttgcaatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccatgagatgctgcgtc |
251 |
Q |
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|||||| |||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35854688 |
taacctgtctgttttgaggtatattggccttcaattttgctatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccatgagatgctgcgtc |
35854589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 130 - 251
Target Start/End: Complemental strand, 10521469 - 10521348
Alignment:
| Q |
130 |
gatcttgagagctccacaacaataacctctctgttttgaggtatattagctttcaattttgcaatagcaatagcacgcgatatcccaccaatagcatcaa |
229 |
Q |
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|||||||||||||| |||| | |||||| | |||||||||||||||| || || |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
10521469 |
gatcttgagagctcgacaagattaacctgtttgttttgaggtatattggccttgaattttgcgatagcaatagcacgcgatatcccaccaatagcatcaa |
10521370 |
T |
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| Q |
230 |
ccaaaccatgagatgctgcgtc |
251 |
Q |
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||||||| |||||||||||||| |
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| T |
10521369 |
ccaaaccttgagatgctgcgtc |
10521348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 222 - 251
Target Start/End: Original strand, 35802504 - 35802533
Alignment:
| Q |
222 |
agcatcaaccaaaccatgagatgctgcgtc |
251 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
35802504 |
agcatcaaccaaaccatgagatgctgcgtc |
35802533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 135 - 248
Target Start/End: Original strand, 7972058 - 7972171
Alignment:
| Q |
135 |
tgagagctccacaacaataacctctctgttttgaggtatattagctttcaattttgcaatagcaatagcacgcgatatcccaccaatagcatcaaccaaa |
234 |
Q |
| |
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|||||||||||||| | |||| | |||||||||||| | ||| || ||||||||||| ||||||||||||||||||| |||| |||||||| |||||| |
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| T |
7972058 |
tgagagctccacaatagtaacatgtctgttttgaggaagattggccttcaattttgctatagcaatagcacgcgatagtccactgatagcatcgaccaaa |
7972157 |
T |
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| Q |
235 |
ccatgagatgctgc |
248 |
Q |
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|||| |||| |||| |
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| T |
7972158 |
ccattagatactgc |
7972171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 243
Target Start/End: Original strand, 7961689 - 7961796
Alignment:
| Q |
136 |
gagagctccacaacaataacctctctgttttgaggtatattagctttcaattttgcaatagcaatagcacgcgatatcccaccaatagcatcaaccaaac |
235 |
Q |
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|||| |||||||| | |||| | | |||||||||| ||||| || ||||||||||| ||||||||||| ||||||| |||||||||||||| |||||| |
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| T |
7961689 |
gagaactccacaatagtaacatgtttgttttgaggaatattggccttcaattttgctatagcaatagcgtgcgatattccaccaatagcatcgaccaaat |
7961788 |
T |
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| Q |
236 |
catgagat |
243 |
Q |
| |
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||| |||| |
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| T |
7961789 |
cattagat |
7961796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 248
Target Start/End: Complemental strand, 24357588 - 24357505
Alignment:
| Q |
165 |
ttgaggtatattagctttcaattttgcaatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccatgagatgctgc |
248 |
Q |
| |
|
|||||||||||| || ||||||||||| || |||||||| || || | |||||||||||||||||||||||||| |||||||| |
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| T |
24357588 |
ttgaggtatattggccttcaattttgctatggcaatagctcgggaaaggccaccaatagcatcaaccaaaccatgtgatgctgc |
24357505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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