View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0810_high_38 (Length: 222)
Name: NF0810_high_38
Description: NF0810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0810_high_38 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 24 - 209
Target Start/End: Complemental strand, 36552675 - 36552492
Alignment:
| Q |
24 |
catttcagacatagagagtttgttgagtgcagcattgtgaacctcacaaacagcaagtatctgagcaatgttttcaacatcagcatacagatttttggcc |
123 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36552675 |
catttcagacatagagagtttgttgagtgcagcattgtgaacctcacaaacagtaaggatctgagcaatgttttcaacatcagcatacagctttttggcc |
36552576 |
T |
|
| Q |
124 |
ttgttagcaaacttcagtgcctctctacaaattcaccaatttgcatcttagtttccgccagttgctttaccctcacagcctcgtct |
209 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36552575 |
ttgttagcaaacttcagtgc--ctctacaaattcaccaatttgcatcttagtttccgccagttgctttaccctcacagcctcgtct |
36552492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 3 - 190
Target Start/End: Complemental strand, 36531184 - 36530999
Alignment:
| Q |
3 |
ctgaagaattccataccagtccatttcagacatagagagtttgttgagtgcagcattgtgaacctcacaaacagcaagtatctgagcaatgttttcaaca |
102 |
Q |
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|||||||| ||||||||||||||| ||| || |||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36531184 |
ctgaagaactccataccagtccatatcatacttagacagcttgttgagtgcagcattgtgaacctcacaaacagcaaggatctgagcaatgttttcaaca |
36531085 |
T |
|
| Q |
103 |
tcagcatacagatttttggccttgttagcaaacttcagtgcctctctacaaattcaccaatttgcatcttagtttccgccagttgctt |
190 |
Q |
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| T |
36531084 |
tcagcatagagccttttggccttgttagcaaacttcagtgc--atctacaaattcacccctttgcattttagtttctgccagttgctt |
36530999 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 3 - 188
Target Start/End: Complemental strand, 36524849 - 36524666
Alignment:
| Q |
3 |
ctgaagaattccataccagtccatttcagacatagagagtttgttgagtgcagcattgtgaacctcacaaacagcaagtatctgagcaatgttttcaaca |
102 |
Q |
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|||||||||||||||||||||||| |||||| |||| || ||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
36524849 |
ctgaagaattccataccagtccatatcagacttagacagcttgttaagtgcagcattgtgaacctcacaaacagtaaggatctgagcaatgttttcaaca |
36524750 |
T |
|
| Q |
103 |
tcagcatacagatttttggccttgttagcaaacttcagtgcctctctacaaattcaccaatttgcatcttagtttccgccagttgc |
188 |
Q |
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| T |
36524749 |
tcagcatacatcgttttggccttgttagcaaacttcagtgc--ctctacaaattcacccctttgcattctactttccgccagttgc |
36524666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 3 - 205
Target Start/End: Original strand, 26306155 - 26306355
Alignment:
| Q |
3 |
ctgaagaattccataccagtccatttcagacatagagagtttgttgagtgcagcattgtgaacctcacaaacagcaagtatctgagcaatgttttcaaca |
102 |
Q |
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|||||||||| |||| ||||||||||| ||||||||||||| || ||||||||| |||||||||||||||| ||||| | ||||||||||||||| ||| |
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| T |
26306155 |
ctgaagaatttcataatagtccatttcaaacatagagagtttcttcagtgcagcaatgtgaacctcacaaactgcaaggacctgagcaatgttttccaca |
26306254 |
T |
|
| Q |
103 |
tcagcatacagatttttggccttgttagcaaacttcagtgcctctctacaaattcaccaatttgcatcttagtttccgccagttgctttaccctcacagc |
202 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||||| ||||||||||||||||| || |||| ||||| |
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| T |
26306255 |
ccagcatacagatttttggcctttttagcaaacttcagtgc--atctacgaattcacccctttgcattttagtttccgccagttgtttagcccttacagc |
26306352 |
T |
|
| Q |
203 |
ctc |
205 |
Q |
| |
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||| |
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| T |
26306353 |
ctc |
26306355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 20716274 - 20716342
Alignment:
| Q |
3 |
ctgaagaattccataccagtccatttcagacatagagagtttgttgagtgcagcattgtgaacctcaca |
71 |
Q |
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|||||||||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||| |
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| T |
20716274 |
ctgaagaatttcataccagtccatttcacacctagagagtttgctgagtgcagcattgtgaacctcaca |
20716342 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 47090698 - 47090764
Alignment:
| Q |
5 |
gaagaattccataccagtccatttcagacatagagagtttgttgagtgcagcattgtgaacctcaca |
71 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||| |
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| T |
47090698 |
gaagaattccataccagtccatatcagacatagagagtttgttctgtgcagcacagtgaacctcaca |
47090764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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