View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0810_high_40 (Length: 218)
Name: NF0810_high_40
Description: NF0810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0810_high_40 |
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Alignment Details
Target: chr1 (Bit Score: 117; Significance: 9e-60; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 36524754 - 36524930
Alignment:
| Q |
18 |
gaaaacattgctcagatacttgctgtttgtgaggttcacaatgctgcactcaacaaactctctatgtctgaaatggactggtatggaattcttcaggcag |
117 |
Q |
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| T |
36524754 |
gaaaacattgctcagatccttactgtttgtgaggttcacaatgctgcacttaacaagctgtctaagtctgatatggactggtatggaattcttcagacag |
36524853 |
T |
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| Q |
118 |
aaagtctctccgaggaagccatcataaggaaacagtacagaaagcttgcactgctacttcatcctgataaaaataaa |
194 |
Q |
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| T |
36524854 |
aaagtctctccgaggaagcaatcataaagaaacagtacagaaaactcggattgctacttcatcttgataaaaataaa |
36524930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 36531089 - 36531265
Alignment:
| Q |
18 |
gaaaacattgctcagatacttgctgtttgtgaggttcacaatgctgcactcaacaaactctctatgtctgaaatggactggtatggaattcttcaggcag |
117 |
Q |
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| T |
36531089 |
gaaaacattgctcagatccttgctgtttgtgaggttcacaatgctgcactcaacaagctgtctaagtatgatatggactggtatggagttcttcagactg |
36531188 |
T |
|
| Q |
118 |
aaagtctctccgaggaagccatcataaggaaacagtacagaaagcttgcactgctacttcatcctgataaaaataaa |
194 |
Q |
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| T |
36531189 |
aaaaattatccgaggaagcaatcataaagaaacagtacaagaagcttgcactgctacttcatcctgataaaaataaa |
36531265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 26306250 - 26306074
Alignment:
| Q |
18 |
gaaaacattgctcagatacttgctgtttgtgaggttcacaatgctgcactcaacaaactctctatgtctgaaatggactggtatggaattcttcaggcag |
117 |
Q |
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| T |
26306250 |
gaaaacattgctcaggtccttgcagtttgtgaggttcacattgctgcactgaagaaactctctatgtttgaaatggactattatgaaattcttcagacac |
26306151 |
T |
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| Q |
118 |
aaagtctctccgaggaagccatcataaggaaacagtacagaaagcttgcactgctacttcatcctgataaaaataaa |
194 |
Q |
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| T |
26306150 |
atagattctccgaggaagcaatcataaagacgcagtacagaaagctcgcactgctacttcatcctgataaaaataaa |
26306074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 45 - 167
Target Start/End: Complemental strand, 20716342 - 20716220
Alignment:
| Q |
45 |
tgtgaggttcacaatgctgcactcaacaaactctctatgtctgaaatggactggtatggaattcttcaggcagaaagtctctccgaggaagccatcataa |
144 |
Q |
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||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| |||||||||| ||||||| |||||||||||| | |||| || |
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| T |
20716342 |
tgtgaggttcacaatgctgcactcagcaaactctctaggtgtgaaatggactggtatgaaattcttcagacagaaagactctccgaggaaacaatcacaa |
20716243 |
T |
|
| Q |
145 |
ggaaacagtacagaaagcttgca |
167 |
Q |
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|||||||||||||||| ||||| |
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| T |
20716242 |
agaaacagtacagaaagattgca |
20716220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 36552601 - 36552675
Alignment:
| Q |
18 |
gaaaacattgctcagatacttgctgtttgtgaggttcacaatgctgcactcaacaaactctctatgtctgaaatg |
92 |
Q |
| |
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||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36552601 |
gaaaacattgctcagatccttactgtttgtgaggttcacaatgctgcactcaacaaactctctatgtctgaaatg |
36552675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 45 - 194
Target Start/End: Complemental strand, 47090764 - 47090615
Alignment:
| Q |
45 |
tgtgaggttcacaatgctgcactcaacaaactctctatgtctgaaatggactggtatggaattcttcaggcagaaagtctctccgaggaagccatcataa |
144 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||| | | || | | | || ||||| | |||| |
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| T |
47090764 |
tgtgaggttcactgtgctgcacagaacaaactctctatgtctgatatggactggtatggaattcttctgactgataaatttactgatgaagcaacaataa |
47090665 |
T |
|
| Q |
145 |
ggaaacagtacagaaagcttgcactgctacttcatcctgataaaaataaa |
194 |
Q |
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||| ||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
47090664 |
agaagcagtataaaaagcttgcactgctacttcatcctgataaaaataaa |
47090615 |
T |
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