View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0810_low_11 (Length: 526)

Name: NF0810_low_11
Description: NF0810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0810_low_11
NF0810_low_11
[»] chr4 (11 HSPs)
chr4 (290-526)||(22278464-22278704)
chr4 (84-254)||(22278727-22278897)
chr4 (396-522)||(19841884-19842010)
chr4 (396-526)||(38951772-38951902)
chr4 (447-523)||(41039487-41039563)
chr4 (466-511)||(17120227-17120272)
chr4 (396-453)||(43624569-43624626)
chr4 (346-394)||(17708343-17708391)
chr4 (466-497)||(33340755-33340786)
chr4 (396-471)||(40714671-40714746)
chr4 (352-394)||(5545988-5546030)
[»] chr8 (8 HSPs)
chr8 (396-526)||(9762777-9762907)
chr8 (396-526)||(7987053-7987183)
chr8 (396-526)||(8227091-8227224)
chr8 (402-515)||(11481578-11481691)
chr8 (423-510)||(13355967-13356055)
chr8 (459-526)||(7968344-7968411)
chr8 (463-526)||(36582820-36582883)
chr8 (396-471)||(28211765-28211840)
[»] chr1 (11 HSPs)
chr1 (396-526)||(11894409-11894539)
chr1 (396-526)||(47140937-47141066)
chr1 (397-515)||(48378935-48379055)
chr1 (396-526)||(25987513-25987643)
chr1 (396-496)||(17562641-17562746)
chr1 (396-496)||(31585088-31585193)
chr1 (482-526)||(36728684-36728728)
chr1 (446-484)||(31292680-31292718)
chr1 (396-454)||(36728627-36728684)
chr1 (315-394)||(943889-943968)
chr1 (396-471)||(2191640-2191715)
[»] chr3 (11 HSPs)
chr3 (395-526)||(25874553-25874684)
chr3 (402-526)||(27926490-27926612)
chr3 (396-510)||(21288256-21288370)
chr3 (319-393)||(49392052-49392126)
chr3 (290-394)||(51312019-51312123)
chr3 (99-176)||(49392286-49392363)
chr3 (447-526)||(5295358-5295438)
chr3 (396-467)||(13826260-13826331)
chr3 (186-233)||(49392203-49392252)
chr3 (396-453)||(3778827-3778884)
chr3 (346-394)||(44655895-44655942)
[»] chr5 (11 HSPs)
chr5 (396-526)||(39206967-39207097)
chr5 (396-515)||(33742549-33742668)
chr5 (396-510)||(42878801-42878914)
chr5 (84-180)||(31726526-31726622)
chr5 (396-526)||(3926344-3926474)
chr5 (396-526)||(42837659-42837789)
chr5 (396-499)||(23429418-23429521)
chr5 (438-522)||(35188485-35188569)
chr5 (292-392)||(31726296-31726397)
chr5 (466-526)||(2209680-2209741)
chr5 (396-471)||(26621568-26621644)
[»] chr2 (6 HSPs)
chr2 (396-526)||(13807695-13807825)
chr2 (397-526)||(13626164-13626293)
chr2 (396-526)||(5110358-5110488)
chr2 (396-510)||(31575791-31575905)
chr2 (396-504)||(5704769-5704877)
chr2 (396-515)||(45151089-45151207)
[»] chr7 (14 HSPs)
chr7 (400-526)||(11039040-11039166)
chr7 (396-526)||(23809525-23809655)
chr7 (396-526)||(5973138-5973268)
chr7 (396-526)||(38440261-38440391)
chr7 (426-510)||(30541366-30541450)
chr7 (292-394)||(47531704-47531806)
chr7 (298-372)||(11915944-11916018)
chr7 (329-394)||(12424758-12424823)
chr7 (339-394)||(26839931-26839986)
chr7 (396-453)||(7767217-7767274)
chr7 (338-398)||(7559220-7559280)
chr7 (466-515)||(2943994-2944043)
chr7 (396-453)||(33189541-33189598)
chr7 (297-394)||(37331933-37332030)
[»] chr6 (5 HSPs)
chr6 (396-526)||(10788626-10788756)
chr6 (396-500)||(8576914-8577018)
chr6 (445-526)||(35167184-35167266)
chr6 (462-526)||(641953-642017)
chr6 (467-515)||(28582302-28582350)
[»] scaffold0155 (1 HSPs)
scaffold0155 (478-526)||(6820-6868)


Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-101; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 290 - 526
Target Start/End: Complemental strand, 22278704 - 22278464
Alignment:
Q  290 ggttgtggtgtatttacaaaattgtccatgctttaagagtgaaatatccaaattatccatggtgtctgtattgtctcaaaaaatttgtgtctatttatca 389  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||    
T  22278704 ggttgtggtgtatttacaaaactgtccatgctttaagagtgaaatatccaaattacccatggtgtctgtattgtgtcaaaaaaattgtgtctatttatca 22278605  T
Q  390 tttcttattacataaataa----ccttaacaccatttaatttcctaagaaaaaactctaggtattgtgagtgttattagttattacgctcctttaaaagg 485  Q
     |||| |||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  22278604 cttctcattacataaataaataaccttaacaccatttaatttcctaagaaaaaactctaggtattgtgagtgttattagttattacgctcttttaaaagg 22278505  T
Q  486 aagtgaaagtggttgggatttttgacgcaagagctttgttt 526  Q
    ||||||||||||||| ||||||||| |||||||||||||||    
T  22278504 aagtgaaagtggttgagatttttgatgcaagagctttgttt 22278464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 84 - 254
Target Start/End: Complemental strand, 22278897 - 22278727
Alignment:
Q  84 gacatcatcaccaccacgagactgagatacgacgacgaagaaagagacacaagagttgatggtggcgacgggaagagtttagcgatgacgaagtcggtgg 183  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  22278897 gacatcatcaccaccacgagactgagatacgacaacgaagaaacagacacaagagttgatggtggcgacgggaagagtttggcgatgacgaagtcggtgg 22278798  T
Q  184 atagggtggtggtcgttgttgatagcggttgtaacgaggacggtgggggataatggtgaaggaaaacacac 254  Q
    ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22278797 ataaggtggtggtcgctgttgatagcggttgtaacgaggacggtgggggataatggtgaaggaaaacacac 22278727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 396 - 522
Target Start/End: Complemental strand, 19842010 - 19841884
Alignment:
Q  396 attacataaataaccttaacaccatttaatttcctaagaaaaaactctaggtattgtgagtgttattagttattacgctcctttaaaaggaagtgaaagt 495  Q
    ||||||||||||||||||| | |||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  19842010 attacataaataaccttaatatcattcaattttctaagaaaaaaccctaggtattgtgagtgttattagttattacgctcatttaaaaggaagtgaaaat 19841911  T
Q  496 ggttgggatttttgacgcaagagcttt 522  Q
    |||||||||| |||| |||| ||||||    
T  19841910 ggttgggattgttgatgcaatagcttt 19841884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 396 - 526
Target Start/End: Complemental strand, 38951902 - 38951772
Alignment:
Q  396 attacataaataaccttaacaccatttaatttcctaagaaaaaactctaggtattgtgagtgttattagttattacgctcctttaaaaggaagtgaaagt 495  Q
    |||||||||||||||| || | |||| || ||||| |||||| ||  ||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  38951902 attacataaataacctcaatatcattcaacttcctgagaaaacaccttaggtattgtgagtgttatcagttattacgctcctttaaaatgaagtgaaagt 38951803  T
Q  496 ggttgggatttttgacgcaagagctttgttt 526  Q
    |||||||||| |||| |||||||||||||||    
T  38951802 ggttgggattgttgaagcaagagctttgttt 38951772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 447 - 523
Target Start/End: Complemental strand, 41039563 - 41039487
Alignment:
Q  447 tattgtgagtgttattagttattacgctcctttaaaaggaagtgaaagtggttgggatttttgacgcaagagctttg 523  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||| |||| |||| |||||||    
T  41039563 tattgtgagtgttatcagttattacgctcctttaaaaggaaatgaaagtggttggaattgttgaagcaaaagctttg 41039487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 466 - 511
Target Start/End: Original strand, 17120227 - 17120272
Alignment:
Q  466 tattacgctcctttaaaaggaagtgaaagtggttgggatttttgac 511  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||    
T  17120227 tattacgctcctttaaaaggaagtgaaagtggtcgggattgttgac 17120272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 396 - 453
Target Start/End: Complemental strand, 43624626 - 43624569
Alignment:
Q  396 attacataaataaccttaacaccatttaatttcctaagaaaaaactctaggtattgtg 453  Q
    ||||||||||||||||||| | |||| || ||||||| ||||||| ||||||||||||    
T  43624626 attacataaataaccttaatatcattcaacttcctaacaaaaaaccctaggtattgtg 43624569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 394
Target Start/End: Complemental strand, 17708391 - 17708343
Alignment:
Q  346 ccatggtgtctgtattgtctcaaaaaatttgtgtctatttatcatttct 394  Q
    ||||| ||||| |||||| ||||||||| ||||||||||||||||||||    
T  17708391 ccatgatgtctctattgtgtcaaaaaatgtgtgtctatttatcatttct 17708343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 497
Target Start/End: Complemental strand, 33340786 - 33340755
Alignment:
Q  466 tattacgctcctttaaaaggaagtgaaagtgg 497  Q
    ||||||||||||||||||||||||||||||||    
T  33340786 tattacgctcctttaaaaggaagtgaaagtgg 33340755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 471
Target Start/End: Original strand, 40714671 - 40714746
Alignment:
Q  396 attacataaataaccttaacaccatttaatttcctaagaaaaaactctaggtattgtgagtgttattagttattac 471  Q
    |||||||||||||| |||| ||| || || ||  |||| |||||  ||| ||||||||||||||||||||||||||    
T  40714671 attacataaataactttaatacctttcaactttttaagcaaaaaacctaagtattgtgagtgttattagttattac 40714746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 352 - 394
Target Start/End: Complemental strand, 5546030 - 5545988
Alignment:
Q  352 tgtctgtattgtctcaaaaaatttgtgtctatttatcatttct 394  Q
    ||||| |||||| ||||||||| ||||||||||||||||||||    
T  5546030 tgtctatattgtgtcaaaaaatgtgtgtctatttatcatttct 5545988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 396 - 526
Target Start/End: Original strand, 9762777 - 9762907
Alignment:
Q  396 attacataaataaccttaacaccatttaatttcctaagaaaaaactctaggtattgtgagtgttattagttattacgctcctttaaaaggaagtgaaagt 495  Q
    ||||||||||||||||||| | |||| || |||||||||||| || |||| ||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  9762777 attacataaataaccttaatatcattcaacttcctaagaaaacaccctagatattgtgagtgttattagttattacgctcctttaaaatgaagtaaaagt 9762876  T
Q  496 ggttgggatttttgacgcaagagctttgttt 526  Q
    |||||||||| |||| |||| || |||||||    
T  9762877 ggttgggattgttgaagcaaaagttttgttt 9762907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 396 - 526
Target Start/End: Original strand, 7987053 - 7987183
Alignment:
Q  396 attacataaataaccttaacaccatttaatttcctaagaaaaaactctaggtattgtgagtgttattagttattacgctcctttaaaaggaagtgaaagt 495  Q
    ||||||||||||||||||| |||||| || ||  ||||||||||   |||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  7987053 attacataaataaccttaataccattcaacttattaagaaaaaaacataggtattgtgaatgttattagttattacgctcctttaaaaggaaatgaaagt 7987152  T
Q  496 ggttgggatttttgacgcaagagctttgttt 526  Q
    ||||| |||| |||| |||||| ||||||||    
T  7987153 ggttgagattgttgatgcaagaactttgttt 7987183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 396 - 526
Target Start/End: Original strand, 8227091 - 8227224
Alignment:
Q  396 attacataaataaccttaacaccatttaatttcctaagaaaaaactctaggtattgtgagtgttatta---gttattacgctcctttaaaaggaagtgaa 492  Q
    |||||||||||||||| || | |||| || |||||||||||| || ||| |||||||||||||||| |   |||||||||||||||||||||||||||||    
T  8227091 attacataaataacctcaatatcattcaacttcctaagaaaacaccctaagtattgtgagtgttatcatcggttattacgctcctttaaaaggaagtgaa 8227190  T
Q  493 agtggttgggatttttgacgcaagagctttgttt 526  Q
    ||||||||  ||| |||| |||| | ||||||||    
T  8227191 agtggttgacattgttgaagcaaaaactttgttt 8227224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 402 - 515
Target Start/End: Complemental strand, 11481691 - 11481578
Alignment:
Q  402 taaataaccttaacaccatttaatttcctaagaaaaaactctaggtattgtgagtgttattagttattacgctcctttaaaaggaagtgaaagtggttgg 501  Q
    |||||||||| || | |||| || |||||||||||| || |||| ||||||||||||||| |||||||||||||||||||||| |||| ||| |||||||    
T  11481691 taaataacctcaatatcattcaacttcctaagaaaacaccctagatattgtgagtgttatcagttattacgctcctttaaaagaaagtaaaaatggttgg 11481592  T
Q  502 gatttttgacgcaa 515  Q
    |||| |||| ||||    
T  11481591 gattgttgaagcaa 11481578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 423 - 510
Target Start/End: Complemental strand, 13356055 - 13355967
Alignment:
Q  423 aatttcctaagaaaaaactctaggtattgtgagtgttattagttattacgctcctttaaaaggaa-gtgaaagtggttgggatttttga 510  Q
    ||||||||||| |||||   | |||||||||| | |||||||||||||||||||||||||||||| ||||||||||||| |||| ||||    
T  13356055 aatttcctaagcaaaaatcgtcggtattgtgaatattattagttattacgctcctttaaaaggaaggtgaaagtggttgcgattgttga 13355967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 459 - 526
Target Start/End: Original strand, 7968344 - 7968411
Alignment:
Q  459 tattagttattacgctcctttaaaaggaagtgaaagtggttgggatttttgacgcaagagctttgttt 526  Q
    |||||||||||||||||||||||||| || ||||||||||||||||| |||| |||||| || |||||    
T  7968344 tattagttattacgctcctttaaaagaaaatgaaagtggttgggattgttgatgcaagaactatgttt 7968411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 463 - 526
Target Start/End: Original strand, 36582820 - 36582883
Alignment:
Q  463 agttattacgctcctttaaaaggaagtgaaagtggttgggatttttgacgcaagagctttgttt 526  Q
    |||||||| |||| |||||| |||||||||||||||||||||| ||||  ||||||||||||||    
T  36582820 agttattatgctcatttaaatggaagtgaaagtggttgggattgttgaatcaagagctttgttt 36582883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 471
Target Start/End: Original strand, 28211765 - 28211840
Alignment:
Q  396 attacataaataaccttaacaccatttaatttcctaagaaaaaactctaggtattgtgagtgttattagttattac 471  Q
    ||||||||||||||||||| ||| || || |||||||  |||||  || |||| | ||||||||||||||||||||    
T  28211765 attacataaataaccttaatacctttcaacttcctaaacaaaaatcctcggtactatgagtgttattagttattac 28211840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 396 - 526
Target Start/End: Complemental strand, 11894539 - 11894409
Alignment:
Q  396 attacataaataaccttaacaccatttaatttcctaagaaaaaactctaggtattgtgagtgttattagttattacgctcctttaaaaggaagtgaaagt 495  Q
    ||||||||||||||||||| | |||| || ||||||| |||||||  || ||||||||||||||||| |||||||| ||| |||||||||||||||||||    
T  11894539 attacataaataaccttaatatcattcaacttcctaaaaaaaaaccttatgtattgtgagtgttatttgttattacactcttttaaaaggaagtgaaagt 11894440  T
Q  496 ggttgggatttttgacgcaagagctttgttt 526  Q
    |||||||||| |||| |||||||||||||||    
T  11894439 ggttgggattgttgatgcaagagctttgttt 11894409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 396 - 526
Target Start/End: Complemental strand, 47141066 - 47140937
Alignment:
Q  396 attacataaataaccttaacaccatttaatttcctaagaaaaaactctaggtattgtgagtgttattagttattacgctcctttaaaaggaagtgaaagt 495  Q
    |||| |||||||| ||||| |||||| || ||||||||||||||| || | ||||||||||||||||||||||||||||| ||||| ||||||||||| |    
T  47141066 attaaataaataatcttaataccattcaacttcctaagaaaaaaccctcg-tattgtgagtgttattagttattacgctcttttaataggaagtgaaaat 47140968  T
Q  496 ggttgggatttttgacgcaagagctttgttt 526  Q
     ||||||||| ||||| ||||| ||||||||    
T  47140967 agttgggattgttgacccaagaactttgttt 47140937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 397 - 515
Target Start/End: Original strand, 48378935 - 48379055
Alignment:
Q  397 ttacataaataaccttaacaccatttaatttcctaagaaaaaactctaggtat--tgtgagtgttattagttattacgctcctttaaaaggaagtgaaag 494  Q
    |||||| |||||||| || | |||| || |||||||||||| || |||| |||  |||||||||||| ||||||||||||||||||||||||| ||||||    
T  48378935 ttacatcaataacctcaatatcattcaacttcctaagaaaacaccctagatatattgtgagtgttatcagttattacgctcctttaaaaggaaatgaaag 48379034  T
Q  495 tggttgggatttttgacgcaa 515  Q
    ||||||||||| |||| ||||    
T  48379035 tggttgggattgttgaagcaa 48379055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 396 - 526
Target Start/End: Complemental strand, 25987643 - 25987513
Alignment:
Q  396 attacataaataaccttaacaccatttaatttcctaagaaaaaactctaggtattgtgagtgttattagttattacgctcctttaaaaggaagtgaaagt 495  Q
    |||||||||||| ||| || | |||| ||  | ||||||||| || |||| ||||||||||||||| ||||||||||||| |||||||| || ||||| |    
T  25987643 attacataaatatcctcaatatcattcaacattctaagaaaacaccctagatattgtgagtgttatcagttattacgctcttttaaaagaaaatgaaaat 25987544  T
Q  496 ggttgggatttttgacgcaagagctttgttt 526  Q
    ||||||||||  ||| |||||||||||||||    
T  25987543 ggttgggattgatgaagcaagagctttgttt 25987513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 396 - 496
Target Start/End: Original strand, 17562641 - 17562746
Alignment:
Q  396 attacataaataaccttaacaccatttaatttcctaagaaaaaactcta-----ggtattgtgagtgttattagttattacgctcctttaaaaggaagtg 490  Q
    |||||||||||||| | || | |||| || |||||| ||||||||||||      ||||||||||| ||||||||||||| |||||||||||||||||||    
T  17562641 attacataaataacatcaatatcattcaacttcctaggaaaaaactctatgtattgtattgtgagtattattagttattatgctcctttaaaaggaagtg 17562740  T
Q  491 aaagtg 496  Q
    ||||||    
T  17562741 aaagtg 17562746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 396 - 496
Target Start/End: Original strand, 31585088 - 31585193
Alignment:
Q  396 attacataaataaccttaacaccatttaatttcctaagaaaaaactcta-----ggtattgtgagtgttattagttattacgctcctttaaaaggaagtg 490  Q
    |||||||||||||| | || | |||| || |||||| ||||||||||||      ||||||||||| ||||||||||||| |||||||||||||||||||    
T  31585088 attacataaataacatcaatatcattcaacttcctaggaaaaaactctatgtattgtattgtgagtattattagttattatgctcctttaaaaggaagtg 31585187  T
Q  491 aaagtg 496  Q
    ||||||    
T  31585188 aaagtg 31585193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 482 - 526
Target Start/End: Original strand, 36728684 - 36728728
Alignment:
Q  482 aaggaagtgaaagtggttgggatttttgacgcaagagctttgttt 526  Q
    |||||||||||||||||||||||| |||| |||||||||||||||    
T  36728684 aaggaagtgaaagtggttgggattgttgaagcaagagctttgttt 36728728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 446 - 484
Target Start/End: Original strand, 31292680 - 31292718
Alignment:
Q  446 gtattgtgagtgttattagttattacgctcctttaaaag 484  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  31292680 gtattgtgagtgttattagttattacgctcctttgaaag 31292718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 454
Target Start/End: Original strand, 36728627 - 36728684
Alignment:
Q  396 attacataaataaccttaacaccatttaatttcctaagaaaaaactctaggtattgtga 454  Q
    ||||||||||||| ||||| | ||||||| ||||||||||||||| |||||||||||||    
T  36728627 attacataaataatcttaatatcatttaacttcctaagaaaaaac-ctaggtattgtga 36728684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 394
Target Start/End: Complemental strand, 943968 - 943889
Alignment:
Q  315 ccatgctttaagagtgaaatatccaaattatccatggtgtctgtattgtctcaaaaaatttgtgtctatttatcatttct 394  Q
    ||||||||||||  ||||||| ||||||||| |||| ||| |||||||| ||||||||| | | | || |||||||||||    
T  943968 ccatgctttaaggttgaaatacccaaattattcatgatgtatgtattgtgtcaaaaaatatatttttagttatcatttct 943889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 471
Target Start/End: Original strand, 2191640 - 2191715
Alignment:
Q  396 attacataaataaccttaacaccatttaatttcctaagaaaaaactctaggtattgtgag-tgttattagttattac 471  Q
    ||||||||||||||||||| ||  || || || |||||||||||| || |||| |||||| ||||||||||||||||    
T  2191640 attacataaataaccttaatacttttcaaatttctaagaaaaaac-ctcggtagtgtgagttgttattagttattac 2191715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 7e-35; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 395 - 526
Target Start/End: Original strand, 25874553 - 25874684
Alignment:
Q  395 tattacataaataaccttaacaccatttaatttcctaagaaaaaactctaggtattgtgagtgttattagttattacgctcctttaaaaggaagtgaaag 494  Q
    ||||||||||||||||| || | |||| || |||| ||||||| || |||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  25874553 tattacataaataacctcaatatcattcaacttccgaagaaaacaccctagatattgtgagtgttatcagttattacgctcctttaaaaggaagtgaaag 25874652  T
Q  495 tggttgggatttttgacgcaagagctttgttt 526  Q
    ||||||||| | || | |||||||||||||||    
T  25874653 tggttgggaatgttaaagcaagagctttgttt 25874684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 402 - 526
Target Start/End: Original strand, 27926490 - 27926612
Alignment:
Q  402 taaataaccttaacaccatttaatttcctaagaaaaaactctaggtattgtgagtgttattagttattacgctcctttaaaaggaagtgaaagtggttgg 501  Q
    |||||||||| || |||||| || ||||||||||||| ||  ||||||||||||||||||||||||||||  |||||||||| |||||||||| ||||||    
T  27926490 taaataacctcaataccattcaacttcctaagaaaaacct--aggtattgtgagtgttattagttattacattcctttaaaatgaagtgaaagaggttgg 27926587  T
Q  502 gatttttgacgcaagagctttgttt 526  Q
    |||| |||| | |||||||||||||    
T  27926588 gattgttgaagtaagagctttgttt 27926612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 396 - 510
Target Start/End: Complemental strand, 21288370 - 21288256
Alignment:
Q  396 attacataaataaccttaacaccatttaatttcctaagaaaaaactctaggtattgtgagtgttattagttattacgctcctttaaaaggaagtgaaagt 495  Q
    |||||||||||||| | || | |||| || ||||| |||||| || |||||||||||||||||||| |||||||||| |||||| ||||||| |||||||    
T  21288370 attacataaataacttcaatatcattcaacttcctgagaaaacaccctaggtattgtgagtgttatcagttattacgatccttttaaaggaaatgaaagt 21288271  T
Q  496 ggttgggatttttga 510  Q
    |||||| ||| ||||    
T  21288270 ggttggaattgttga 21288256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 319 - 393
Target Start/End: Complemental strand, 49392126 - 49392052
Alignment:
Q  319 gctttaagagtgaaatatccaaattatccatggtgtctgtattgtctcaaaaaatttgtgtctatttatcatttc 393  Q
    |||||||| ||||||||||||||||| || ||||||||||||||| |||  ||||||||||||||||||||||||    
T  49392126 gctttaagggtgaaatatccaaattacccttggtgtctgtattgtgtcatgaaatttgtgtctatttatcatttc 49392052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 290 - 394
Target Start/End: Complemental strand, 51312123 - 51312019
Alignment:
Q  290 ggttgtggtgtatttacaaaattgtccatgctttaagagtgaaatatccaaattatccatggtgtctgtattgtctcaaaaaatttgtgtctatttatca 389  Q
    |||||||||||||||||||||||| || || || ||| ||||||||||||||||| ||||| ||||| |||||| |   ||| |||||||||| ||||||    
T  51312123 ggttgtggtgtatttacaaaattgcccctgtttaaagggtgaaatatccaaattacccatgctgtctttattgtgtttgaaagtttgtgtctacttatca 51312024  T
Q  390 tttct 394  Q
    |||||    
T  51312023 tttct 51312019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 99 - 176
Target Start/End: Complemental strand, 49392363 - 49392286
Alignment:
Q  99 acgagactgagatacgacgacgaagaaagagacacaagagttgatggtggcgacgggaagagtttagcgatgacgaag 176  Q
    ||||||||||||||||| || | ||||| ||||||||||||| ||||||| |||||||||||| || |||||||||||    
T  49392363 acgagactgagatacgatgagggagaaacagacacaagagtttatggtggtgacgggaagagtgtaacgatgacgaag 49392286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 447 - 526
Target Start/End: Complemental strand, 5295438 - 5295358
Alignment:
Q  447 tattgtgagtgttattagttattacgctcctttaaaaggaagtgaaagtggttgggatt-tttgacgcaagagctttgttt 526  Q
    |||| ||||||||||  ||||||||||||||||||||||| ||||||||||||| |||| || || ||||| |||||||||    
T  5295438 tattatgagtgttatcggttattacgctcctttaaaaggatgtgaaagtggttgagattgttggaagcaagtgctttgttt 5295358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 396 - 467
Target Start/End: Complemental strand, 13826331 - 13826260
Alignment:
Q  396 attacataaataaccttaacaccatttaatttcctaagaaaaaactctaggtattgtgagtgttattagtta 467  Q
    ||||||| |||||||| || | |||| || |||||||||||| || ||||||||||||||||||||||||||    
T  13826331 attacattaataacctcaatatcattcaacttcctaagaaaacaccctaggtattgtgagtgttattagtta 13826260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 49392252 - 49392203
Alignment:
Q  186 agggtggtggtcgttgttg--atagcggttgtaacgaggacggtggggga 233  Q
    |||||||||||||||||||  || ||||||||||||||||||||||||||    
T  49392252 agggtggtggtcgttgttgcgatggcggttgtaacgaggacggtggggga 49392203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 396 - 453
Target Start/End: Original strand, 3778827 - 3778884
Alignment:
Q  396 attacataaataaccttaacaccatttaatttcctaagaaaaaactctaggtattgtg 453  Q
    ||||||||||||||||||| | |||| || ||||||||||||||| ||| ||||||||    
T  3778827 attacataaataaccttaatatcattcaacttcctaagaaaaaaccctaagtattgtg 3778884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 394
Target Start/End: Original strand, 44655895 - 44655942
Alignment:
Q  346 ccatggtgtctgtattgtctcaaaaaatttgtgtctatttatcatttct 394  Q
    ||||||||||| |||||| |||||||| | |||||||||||||||||||    
T  44655895 ccatggtgtctatattgtgtcaaaaaagt-gtgtctatttatcatttct 44655942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 396 - 526
Target Start/End: Original strand, 39206967 - 39207097
Alignment:
Q  396 attacataaataaccttaacaccatttaatttcctaagaaaaaactctaggtattgtgagtgttattagttattacgctcctttaaaaggaagtgaaagt 495  Q
    ||||||||||||| || || | |||| || |||||||||||| || |||||||||||||||||||| ||||||||| |||||||||||||||||| ||||    
T  39206967 attacataaataatctcaatatcattcaacttcctaagaaaacaccctaggtattgtgagtgttatcagttattacactcctttaaaaggaagtggaagt 39207066  T
Q  496 ggttgggatttttgacgcaagagctttgttt 526  Q
    |||||||||| |||| | |||||||||||||    
T  39207067 ggttgggattgttgaagtaagagctttgttt 39207097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 396 - 515
Target Start/End: Original strand, 33742549 - 33742668
Alignment:
Q  396 attacataaataaccttaacaccatttaatttcctaagaaaaaactctaggtattgtgagtgttattagttattacgctcctttaaaaggaagtgaaagt 495  Q
    ||||||||||||||||||| | |||| || |||||||||||| || ||||||||||| |||||||||||||||||  |||||||||||||||||||||||    
T  33742549 attacataaataaccttaatatcattcaacttcctaagaaaacaccctaggtattgtaagtgttattagttattatactcctttaaaaggaagtgaaagt 33742648  T
Q  496 ggttgggatttttgacgcaa 515  Q
    ||||| |||| |||| ||||    
T  33742649 ggttgagattgttgaagcaa 33742668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 396 - 510
Target Start/End: Original strand, 42878801 - 42878914
Alignment:
Q  396 attacataaataaccttaacaccatttaatttcctaagaaaaaactctaggtattgtgagtgttattagttattacgctcctttaaaaggaagtgaaagt 495  Q
    ||||||||||||||||||| |||||| || || |||||||||||| ||||| ||||| || |||||||||||||||||||||||||||||||||||||||    
T  42878801 attacataaataaccttaataccattcaactttctaagaaaaaac-ctaggcattgttagcgttattagttattacgctcctttaaaaggaagtgaaagt 42878899  T
Q  496 ggttgggatttttga 510  Q
    ||||| |||| ||||    
T  42878900 ggttgagattgttga 42878914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 84 - 180
Target Start/End: Complemental strand, 31726622 - 31726526
Alignment:
Q  84 gacatcatcaccaccacgagactgagatacgacgacgaagaaagagacacaagagttgatggtggcgacgggaagagtttagcgatgacgaagtcgg 180  Q
    ||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||| ||| | |||| |||||||||||||||    
T  31726622 gacatcatcaccaccacgagactgagatacgacgagggagaaacagacacaagagttgatggtggcgacgagaacaatttaacgatgacgaagtcgg 31726526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 396 - 526
Target Start/End: Complemental strand, 3926474 - 3926344
Alignment:
Q  396 attacataaataaccttaacaccatttaatttcctaagaaaaaactctaggtattgtgagtgttattagttattacgctcctttaaaaggaagtgaaagt 495  Q
    |||||||||||||||| || | |||| || |||||||||||| ||  ||| ||||||||||||||| |||||||| |||| ||||||||||||| |||||    
T  3926474 attacataaataacctcaatatcattcaacttcctaagaaaacaccatagatattgtgagtgttatcagttattatgctcatttaaaaggaagtaaaagt 3926375  T
Q  496 ggttgggatttttgacgcaagagctttgttt 526  Q
    |||||||||| |||| |||| || |||||||    
T  3926374 ggttgggattgttgaagcaaaagttttgttt 3926344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 396 - 526
Target Start/End: Complemental strand, 42837789 - 42837659
Alignment:
Q  396 attacataaataaccttaacaccatttaatttcctaagaaaaaactctaggtattgtgagtgttattagttattacgctcctttaaaaggaagtgaaagt 495  Q
    ||||||||||||| ||  | | |||| || || ||||||||| || |||| |||| |||||||||| |||||||||||||||||||||||||||||||||    
T  42837789 attacataaataatctccatatcattcaactttctaagaaaacaccctagatattatgagtgttatcagttattacgctcctttaaaaggaagtgaaagt 42837690  T
Q  496 ggttgggatttttgacgcaagagctttgttt 526  Q
    |||||||||| |||| |||| | ||||||||    
T  42837689 ggttgggattgttgaagcaaaaactttgttt 42837659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 396 - 499
Target Start/End: Complemental strand, 23429521 - 23429418
Alignment:
Q  396 attacataaataaccttaacaccatttaatttcctaagaaaaaactctaggtattgtgagtgttattagttattacgctcctttaaaaggaagtgaaagt 495  Q
    |||||||||||||||| |  | |||| || ||||||||||||  | ||| |||||||||| ||||| |||||||||||| ||||||||||||||||||||    
T  23429521 attacataaataacctcagtatcattcaacttcctaagaaaactccctaagtattgtgagggttatcagttattacgcttctttaaaaggaagtgaaagt 23429422  T
Q  496 ggtt 499  Q
    ||||    
T  23429421 ggtt 23429418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 438 - 522
Target Start/End: Original strand, 35188485 - 35188569
Alignment:
Q  438 aactctaggtattgtgagtgttattagttattacgctcctttaaaaggaagtgaaagtggttgggatttttgacgcaagagcttt 522  Q
    |||| ||||||||||||||||||| |||||||| |||||||||||| ||| ||||||| |||| |||| |||| |||| ||||||    
T  35188485 aactttaggtattgtgagtgttatcagttattatgctcctttaaaatgaaatgaaagttgttgagattgttgaagcaaaagcttt 35188569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 392
Target Start/End: Complemental strand, 31726397 - 31726296
Alignment:
Q  292 ttgtggtgtatttacaaaattgtccatgctttaagagtgaaatatccaaattatccatggtgtctgtattgtctc-aaaaaatttgtgtctatttatcat 390  Q
    |||||||| |||||||| | || || ||||||||| |||||||||||||||||||| |  ||| |||||||| || || ||||  |||||||||||||||    
T  31726397 ttgtggtgcatttacaacactgcccctgctttaagggtgaaatatccaaattatccttaatgtatgtattgtgtctaagaaatcagtgtctatttatcat 31726298  T
Q  391 tt 392  Q
    ||    
T  31726297 tt 31726296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 466 - 526
Target Start/End: Complemental strand, 2209741 - 2209680
Alignment:
Q  466 tattacgctcctttaaaaggaagtgaaagtggttgggatttttgacgcaag-agctttgttt 526  Q
    |||||||||||||||||| |||| ||||||||| |||||| |||| ||||| ||||||||||    
T  2209741 tattacgctcctttaaaatgaagggaaagtggtcgggattgttgaagcaagaagctttgttt 2209680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 471
Target Start/End: Complemental strand, 26621644 - 26621568
Alignment:
Q  396 attacataaataaccttaacaccatttaatttcctaagaa-aaaactctaggtattgtgagtgttattagttattac 471  Q
    |||||| |||||||||||| ||| || || |||||||||| ||||  || ||||||||||||||||| | |||||||    
T  26621644 attacacaaataaccttaatacctttcaacttcctaagaaaaaaaacctcggtattgtgagtgttatcaattattac 26621568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 396 - 526
Target Start/End: Complemental strand, 13807825 - 13807695
Alignment:
Q  396 attacataaataaccttaacaccatttaatttcctaagaaaaaactctaggtattgtgagtgttattagttattacgctcctttaaaaggaagtgaaagt 495  Q
    |||| ||||||||||| || | |||| || |||||||||||| || |||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  13807825 attatataaataacctcaatatcattcaacttcctaagaaaacaccctaggtattgtgagtgttatcagttattacgctcctttaaaatgaagtgaaagt 13807726  T
Q  496 ggttgggatttttgacgcaagagctttgttt 526  Q
    |||| ||||| |||| |||| ||||||||||    
T  13807725 ggtttggattgttgaagcaaaagctttgttt 13807695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 397 - 526
Target Start/End: Original strand, 13626164 - 13626293
Alignment:
Q  397 ttacataaataaccttaacaccatttaatttcctaagaaaaaactctaggtattgtgagtgttattagttattacgctcctttaaaaggaagtgaaagtg 496  Q
    ||||||||||||||| || | |||| || |||||||||||| ||  |||||||| |||||||||| | ||||||||||||||||||||||||||||||||    
T  13626164 ttacataaataacctcaatatcattcaacttcctaagaaaacaccttaggtattatgagtgttatcaattattacgctcctttaaaaggaagtgaaagtg 13626263  T
Q  497 gttgggatttttgacgcaagagctttgttt 526  Q
    ||||||| | |||| |||||||||||||||    
T  13626264 gttgggaatgttgaagcaagagctttgttt 13626293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 396 - 526
Target Start/End: Complemental strand, 5110488 - 5110358
Alignment:
Q  396 attacataaataaccttaacaccatttaatttcctaagaaaaaactctaggtattgtgagtgttattagttattacgctcctttaaaaggaagtgaaagt 495  Q
    |||||||||||||||| || | |||| || || ||||||||| ||  ||||||||||||||||||| | |||||||||||||||||||| ||||||||||    
T  5110488 attacataaataacctcaatatcattcaactttctaagaaaacacgataggtattgtgagtgttatcaattattacgctcctttaaaagaaagtgaaagt 5110389  T
Q  496 ggttgggatttttgacgcaagagctttgttt 526  Q
    |||||||||| |||| |||| ||||||||||    
T  5110388 ggttgggattgttgaagcaaaagctttgttt 5110358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 396 - 510
Target Start/End: Original strand, 31575791 - 31575905
Alignment:
Q  396 attacataaataaccttaacaccatttaa-tttcctaagaaaaaactctaggtattgtgagtgttattagttattacgctcctttaaaaggaagtgaaag 494  Q
    |||||||||||||||| || | |||| || ||| ||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  31575791 attacataaataacctcaatatcattcaacttttctaagaaaacactctaggtattgtgagtgttatcagttattacgct-ctttaaaaggaagtgaaag 31575889  T
Q  495 tggttgggatttttga 510  Q
    ||||||||||| ||||    
T  31575890 tggttgggattgttga 31575905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 396 - 504
Target Start/End: Complemental strand, 5704877 - 5704769
Alignment:
Q  396 attacataaataaccttaacaccatttaatttcctaagaaaaaactctaggtattgtgagtgttattagttattacgctcctttaaaaggaagtgaaagt 495  Q
    |||||||||||||||| || | |||| || |||||||||||| || ||||||||||||||||||||||||||||||| || ||||||| ||||||||| |    
T  5704877 attacataaataacctcaatatcattcaacttcctaagaaaacaccctaggtattgtgagtgttattagttattacgttcttttaaaaagaagtgaaaat 5704778  T
Q  496 ggttgggat 504  Q
    |||||||||    
T  5704777 ggttgggat 5704769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 396 - 515
Target Start/End: Original strand, 45151089 - 45151207
Alignment:
Q  396 attacataaataaccttaacaccatttaatttcctaagaaaaaactctaggtattgtgagtgttattagttattacgctcctttaaaaggaagtgaaagt 495  Q
    |||||||||||||||| || | |||| || ||||| |||||| ||| | |||||||||||||||||  ||||||||||||||||| ||| ||||||||||    
T  45151089 attacataaataacctcaatatcattcaacttccttagaaaacact-tcggtattgtgagtgttatcggttattacgctcctttataagaaagtgaaagt 45151187  T
Q  496 ggttgggatttttgacgcaa 515  Q
    |||||||||| |||| ||||    
T  45151188 ggttgggattgttgaagcaa 45151207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 6e-32; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 400 - 526
Target Start/End: Original strand, 11039040 - 11039166
Alignment:
Q  400 cataaataaccttaacaccatttaatttcctaagaaaaaactctaggtattgtgagtgttattagttattacgctcctttaaaaggaagtgaaagtggtt 499  Q
    ||||||||| ||||| ||||||  | |||||||||||||||  || ||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  11039040 cataaataagcttaataccattccacttcctaagaaaaaaccatacgtattgtgagtgttattcgttattacgctcctttaaaaggaagtaaaagtggtt 11039139  T
Q  500 gggatttttgacgcaagagctttgttt 526  Q
    |||||| |||| |||| | ||||||||    
T  11039140 gggattgttgatgcaatatctttgttt 11039166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 396 - 526
Target Start/End: Original strand, 23809525 - 23809655
Alignment:
Q  396 attacataaataaccttaacaccatttaatttcctaagaaaaaactctaggtattgtgagtgttattagttattacgctcctttaaaaggaagtgaaagt 495  Q
    |||||||||||||||| || | |||| || |||||||||||| ||  || |||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  23809525 attacataaataacctcaatatcattcaacttcctaagaaaacacgatacgtattgtgagtgttataagttattacgctcctttaaaaggaattgaaagt 23809624  T
Q  496 ggttgggatttttgacgcaagagctttgttt 526  Q
    |||||||||| |||| |||| || |||||||    
T  23809625 ggttgggattgttgaagcaaaagatttgttt 23809655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 396 - 526
Target Start/End: Complemental strand, 5973268 - 5973138
Alignment:
Q  396 attacataaataaccttaacaccatttaatttcctaagaaaaaactctaggtattgtgagtgttattagttattacgctcctttaaaaggaagtgaaagt 495  Q
    |||||||||||||||| || | |||| || ||||||| |||||   |||||||||||||||||||| ||||||||||||| ||||||||||| |||||||    
T  5973268 attacataaataacctcaatatcattcaacttcctaaaaaaaacacctaggtattgtgagtgttatcagttattacgctcttttaaaaggaattgaaagt 5973169  T
Q  496 ggttgggatttttgacgcaagagctttgttt 526  Q
    |||||||||| |||| |||| | ||||||||    
T  5973168 ggttgggattgttgaagcaaaacctttgttt 5973138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 396 - 526
Target Start/End: Original strand, 38440261 - 38440391
Alignment:
Q  396 attacataaataaccttaacaccatttaatttcctaagaaaaaactctaggtattgtgagtgttattagttattacgctcctttaaaaggaagtgaaagt 495  Q
    ||||||||||||| || || | |||| || ||  |||||||| || ||||||||| |||||||||| |||||||||||||||| ||||||||||||||||    
T  38440261 attacataaataatctcaatatcattcaactttttaagaaaacaccctaggtattatgagtgttataagttattacgctccttcaaaaggaagtgaaagt 38440360  T
Q  496 ggttgggatttttgacgcaagagctttgttt 526  Q
    |||||||||| |||  |||||||||||||||    
T  38440361 ggttgggattgttggagcaagagctttgttt 38440391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 426 - 510
Target Start/End: Original strand, 30541366 - 30541450
Alignment:
Q  426 ttcctaagaaaaaactctaggtattgtgagtgttattagttattacgctcctttaaaaggaagtgaaagtggttgggatttttga 510  Q
    |||||||| |||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||    
T  30541366 ttcctaagcaaaaacccttggtattgtgagtgttattagttattacactcctttaaaaggaagtgaaagtggttgagattgttga 30541450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 292 - 394
Target Start/End: Complemental strand, 47531806 - 47531704
Alignment:
Q  292 ttgtggtgtatttacaaaattgtccatgctttaagagtgaaatatccaaattatccatggtgtctgtattgtctcaaaaaatttgtgtctatttatcatt 391  Q
    |||||||||||||||||||||| || || || ||| ||||||||||||||||||||||||||||| | |||| |   ||||||| |||| | ||||||||    
T  47531806 ttgtggtgtatttacaaaattgcccctgtttaaagggtgaaatatccaaattatccatggtgtctttgttgtgtttgaaaatttttgtccacttatcatt 47531707  T
Q  392 tct 394  Q
    |||    
T  47531706 tct 47531704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 298 - 372
Target Start/End: Complemental strand, 11916018 - 11915944
Alignment:
Q  298 tgtatttacaaaattgtccatgctttaagagtgaaatatccaaattatccatggtgtctgtattgtctcaaaaaa 372  Q
    ||||||||||| | ||||| | |||||||| |||||  |||||||| ||||||||||||||||||| ||||||||    
T  11916018 tgtatttacaacaatgtcctttctttaagattgaaaagtccaaattgtccatggtgtctgtattgtgtcaaaaaa 11915944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 394
Target Start/End: Original strand, 12424758 - 12424823
Alignment:
Q  329 tgaaatatccaaattatccatggtgtctgtattgtctcaaaaaatttgtgtctatttatcatttct 394  Q
    ||||||||||||||| |||||| | | |||||||| ||||||||||||||||||  ||||||||||    
T  12424758 tgaaatatccaaattgtccatgatatatgtattgtgtcaaaaaatttgtgtctacatatcatttct 12424823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 339 - 394
Target Start/End: Complemental strand, 26839986 - 26839931
Alignment:
Q  339 aaattatccatggtgtctgtattgtctcaaaaaatttgtgtctatttatcatttct 394  Q
    ||||| ||||||||||||||||||| ||||||||  |||||||| |||||||||||    
T  26839986 aaattgtccatggtgtctgtattgtgtcaaaaaaagtgtgtctagttatcatttct 26839931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 396 - 453
Target Start/End: Complemental strand, 7767274 - 7767217
Alignment:
Q  396 attacataaataaccttaacaccatttaatttcctaagaaaaaactctaggtattgtg 453  Q
    ||||||||||||||||||| | |||| || ||||||||||||||  ||||||||||||    
T  7767274 attacataaataaccttaatatcattgaacttcctaagaaaaaatcctaggtattgtg 7767217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 398
Target Start/End: Complemental strand, 7559280 - 7559220
Alignment:
Q  338 caaattatccatggtgtctgtattgtctcaaaaaatttgtgtctatttatcatttcttatt 398  Q
    ||||||||||||| | |||||||||| ||||||||||||| | || ||||||||| |||||    
T  7559280 caaattatccatgatttctgtattgtgtcaaaaaatttgtttttagttatcatttattatt 7559220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 515
Target Start/End: Original strand, 2943994 - 2944043
Alignment:
Q  466 tattacgctcctttaaaaggaagtgaaagtggttgggatttttgacgcaa 515  Q
    ||||||||| | ||||||||||||||||||| | ||||||||||| ||||    
T  2943994 tattacgcttccttaaaaggaagtgaaagtgatcgggatttttgaagcaa 2944043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 453
Target Start/End: Complemental strand, 33189598 - 33189541
Alignment:
Q  396 attacataaataaccttaacaccatttaatttcctaagaaaaaactctaggtattgtg 453  Q
    |||||||||||| |||||| |||||| ||  |||||||||||||  ||||||||||||    
T  33189598 attacataaatatccttaataccattcaacatcctaagaaaaaatcctaggtattgtg 33189541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 394
Target Start/End: Complemental strand, 37332030 - 37331933
Alignment:
Q  297 gtgtatttacaaaattgtccatgctttaagagtgaaatatccaaattatccatggtgtctgtattgtctcaaaaaatttgtgtctatttatcatttct 394  Q
    |||||||||||  | || || |||||||||  |||||| || |||||| || || |||||| ||||| || |||||||||||| || |||||||||||    
T  37332030 gtgtatttacattactgcccctgctttaaggttgaaatgtctaaattacccctgatgtctgaattgtgtccaaaaatttgtgtttagttatcatttct 37331933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 6e-32; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 396 - 526
Target Start/End: Complemental strand, 10788756 - 10788626
Alignment:
Q  396 attacataaataaccttaacaccatttaatttcctaagaaaaaactctaggtattgtgagtgttattagttattacgctcctttaaaaggaagtgaaagt 495  Q
    |||||||||||||||| || | |||| || |||||||||||| ||  |||||||||||| |||||| | |||||||||||||||||||| ||||||||||    
T  10788756 attacataaataacctcaatatcattcaacttcctaagaaaacaccttaggtattgtgattgttatcaattattacgctcctttaaaagaaagtgaaagt 10788657  T
Q  496 ggttgggatttttgacgcaagagctttgttt 526  Q
    |||||||||| || | |||||||||||||||    
T  10788656 ggttgggattgtttaagcaagagctttgttt 10788626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 396 - 500
Target Start/End: Complemental strand, 8577018 - 8576914
Alignment:
Q  396 attacataaataaccttaacaccatttaatttcctaagaaaaaactctaggtattgtgagtgttattagttattacgctcctttaaaaggaagtgaaagt 495  Q
    |||| ||||||||||| || | |||| || |||||||||||| ||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8577018 attatataaataacctcaatatcattcaacttcctaagaaaacaccttaggtattgtgagtgttatcagttattacgctcctttaaaaggaagtgaaagt 8576919  T
Q  496 ggttg 500  Q
    |||||    
T  8576918 ggttg 8576914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 445 - 526
Target Start/End: Original strand, 35167184 - 35167266
Alignment:
Q  445 ggtattgtgagtgttattagttattacgctcctttaaaaggaagtgaaagtggttgggatttttgacgcaag-agctttgttt 526  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||||| || |||| |||| | ||| ||||||||||    
T  35167184 ggtattatgagtattattagttattacgctcctttaaaaggaagtgaaagtggatgcgattgttgaagtaagaagctttgttt 35167266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 526
Target Start/End: Original strand, 641953 - 642017
Alignment:
Q  462 tagttattacgctcctttaaaaggaagtgaaagtggttgggatttttgacgcaag-agctttgttt 526  Q
    ||||||||| ||||||||||| ||||||| || ||||||| ||| |||||||||| ||||||||||    
T  641953 tagttattatgctcctttaaa-ggaagtggaaatggttggaattgttgacgcaagaagctttgttt 642017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 467 - 515
Target Start/End: Complemental strand, 28582350 - 28582302
Alignment:
Q  467 attacgctcctttaaaaggaagtgaaagtggttgggatttttgacgcaa 515  Q
    ||||| |||||||||||| ||||||| ||||| ||||||||||| ||||    
T  28582350 attacactcctttaaaagaaagtgaacgtggtcgggatttttgaagcaa 28582302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 478 - 526
Target Start/End: Original strand, 6820 - 6868
Alignment:
Q  478 ttaaaaggaagtgaaagtggttgggatttttgacgcaagagctttgttt 526  Q
    |||||||||||||||||||||||||||| |||| |||| ||||| ||||    
T  6820 ttaaaaggaagtgaaagtggttgggattgttgaagcaaaagcttcgttt 6868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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