View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0810_low_12 (Length: 494)
Name: NF0810_low_12
Description: NF0810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0810_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 360; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 8 - 465
Target Start/End: Complemental strand, 20506016 - 20505571
Alignment:
| Q |
8 |
ccaacaatatattattcaacttattacatacttacatagtaaaaacacagaatttattaaaacaagaacttaagttacataatcaagttcactagcaatg |
107 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
20506016 |
ccaacaatatattattcaacttattacatgcttacatagtaaaaacacagaatttatcaaaacaagaacttaagttacataatcaagttcactagcaatg |
20505917 |
T |
|
| Q |
108 |
taaaaattcaagcaaaagacttaataattccatcttcataagaattaaaggtctcagaaaatacaaaagcagaaacttgttggtccgtcaaaatcaaacg |
207 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
20505916 |
taaaaattcaagcaacagacttaataattccatcttcataagaattaacagtctcagaaaatacaaaagcagaaatttgttggtcagtcaaaatcaaacg |
20505817 |
T |
|
| Q |
208 |
tcctccaacttaaccattattataaaacccaatatttgaacaaaaactagaagatccatcaacacaaaatacaaacttataactaagaccatatttttga |
307 |
Q |
| |
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||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20505816 |
tcctccaacttcaccat-----------ccaatatttgaacaaaaactagaagatccatcaacacaaaatacaaacttataactaagaccatatttttga |
20505728 |
T |
|
| Q |
308 |
atattaaatgttccattcactatttgcataccaggatagttttctggaccaccaataccaacaaaaaatttattaataacattatcaataaatatcaacc |
407 |
Q |
| |
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|| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
20505727 |
atgttaaatgt-ccattcactatttgcataccaggatagttttctcgaccaccaataccaacacaaaatatattaataacattatcaataaatatcaacc |
20505629 |
T |
|
| Q |
408 |
attttgatgattcaacacaatcaggcttctttgtgaactcaatctcaattggtctacc |
465 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
20505628 |
attttgatgattcaacacaatcaggcttctttgtgaactcaatctcgattggtctacc |
20505571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 337 - 465
Target Start/End: Complemental strand, 20475895 - 20475767
Alignment:
| Q |
337 |
accaggatagttttctggaccaccaataccaacaaaaaatttattaataacattatcaataaatatcaaccattttgatgattcaacacaatcaggcttc |
436 |
Q |
| |
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||||||||| ||||| |||||||||||||||||| || ||| | ||||||| |||||| ||||||||||||||||||||||||||| |||| ||||||| |
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| T |
20475895 |
accaggataattttcaggaccaccaataccaacacaagctttttgaataacactatcaacaaatatcaaccattttgatgattcaacgcaattaggcttc |
20475796 |
T |
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| Q |
437 |
tttgtgaactcaatctcaattggtctacc |
465 |
Q |
| |
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||||||||||| || ||||||||| |||| |
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| T |
20475795 |
tttgtgaactcgatatcaattggtgtacc |
20475767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 307 - 427
Target Start/End: Complemental strand, 20517759 - 20517633
Alignment:
| Q |
307 |
aatattaaatgttccattcactatttgcatacc---aggatagttttctggaccaccaataccaacaaaaaatttatt---aataacattatcaataaat |
400 |
Q |
| |
|
|||||||||| ||||||||| |||||| |||| |||||||||||| |||||||||||||||||||| |||| || | |||||||||||| |||| |
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| T |
20517759 |
aatattaaattttccattcaatatttgtgtaccttgaggatagttttcaggaccaccaataccaacaaatgatttgttgttattaacattatcaacaaat |
20517660 |
T |
|
| Q |
401 |
atcaaccattttgatgattcaacacaa |
427 |
Q |
| |
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||||||||||||||||||||||||||| |
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|
| T |
20517659 |
atcaaccattttgatgattcaacacaa |
20517633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 305 - 465
Target Start/End: Complemental strand, 20493742 - 20493582
Alignment:
| Q |
305 |
tgaatattaaatgttccattcactatttgcataccaggatagttttctggaccaccaataccaacaaaaaatttattaataacattatcaataaatatca |
404 |
Q |
| |
|
|||||||||||| |||| |||| | |||||| ||||||||| ||||| |||||||||||||||| | || ||| |||||||||||||| |||||| | |
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| T |
20493742 |
tgaatattaaattttcccttcaatgtttgcacaccaggataattttcaggaccaccaataccaatacaagcttttccaataacattatcaacaaatatta |
20493643 |
T |
|
| Q |
405 |
accattttgatgattcaacacaatcaggcttctttgtgaactcaatctcaattggtctacc |
465 |
Q |
| |
|
||||||||| |||| || ||||| ||| || || ||| |||| ||||||| |||| |||| |
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|
| T |
20493642 |
accattttgttgatgcagcacaactaggttttttcgtgtactcgatctcaagtggtgtacc |
20493582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 391 - 455
Target Start/End: Complemental strand, 2917092 - 2917028
Alignment:
| Q |
391 |
atcaataaatatcaaccattttgatgattcaacacaatcaggcttctttgtgaactcaatctcaa |
455 |
Q |
| |
|
||||| ||| ||||||||||||||||||||| |||||||||||||||| || ||||||||||||| |
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|
| T |
2917092 |
atcaagaaacatcaaccattttgatgattcagcacaatcaggcttcttagtaaactcaatctcaa |
2917028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 455
Target Start/End: Complemental strand, 2930680 - 2930616
Alignment:
| Q |
391 |
atcaataaatatcaaccattttgatgattcaacacaatcaggcttctttgtgaactcaatctcaa |
455 |
Q |
| |
|
||||| ||| |||||||||||||||| |||| ||||||||| ||| || |||||||| ||||||| |
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| T |
2930680 |
atcaacaaacatcaaccattttgatgcttcagcacaatcagcctttttagtgaactcgatctcaa |
2930616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 452
Target Start/End: Original strand, 6869512 - 6869563
Alignment:
| Q |
401 |
atcaaccattttgatgattcaacacaatcaggcttctttgtgaactcaatct |
452 |
Q |
| |
|
|||||||||| |||||||| ||||||| ||||||||| ||||||||||||| |
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|
| T |
6869512 |
atcaaccattgtgatgatttgacacaattaggcttcttagtgaactcaatct |
6869563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 455
Target Start/End: Complemental strand, 24555125 - 24555007
Alignment:
| Q |
337 |
accaggatagttttctggaccaccaataccaacaaaaaatttattaataacattatcaataaatatcaaccattttgatgattcaacacaatcaggcttc |
436 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||| | | | | |||| ||||| || ||||||||||| || |||||| ||||||| ||||| |
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| T |
24555125 |
accaggatagtttgcaggaccaccaataccaacaaaacttagttgagtgacatgatcaacaaccatcaaccatttggaagattcagcacaatctggcttg |
24555026 |
T |
|
| Q |
437 |
tttgtgaactcaatctcaa |
455 |
Q |
| |
|
|| ||||||| ||||||| |
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| T |
24555025 |
ttaatgaactcgatctcaa |
24555007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 20476126 - 20476090
Alignment:
| Q |
115 |
tcaagcaaaagacttaataattccatcttcataagaa |
151 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
20476126 |
tcaagcaacagacttaataattccagcttcataagaa |
20476090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 320 - 436
Target Start/End: Original strand, 13072234 - 13072350
Alignment:
| Q |
320 |
ccattcactatttgcataccaggatagttttctggaccaccaataccaacaaaaaatttattaataacattatcaataaatatcaaccattttgatgatt |
419 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||| | |||||||||||||| |||||||||||||||||| |||| |
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| T |
13072234 |
ccattcaatatttgcataccaggatagttttctggaccaccaataccaacacaagatttttgaataacattatcaacaaatatcaaccattttgaagatt |
13072333 |
T |
|
| Q |
420 |
caacacaatcaggcttc |
436 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
13072334 |
caacacaatcaggcttc |
13072350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 289
Target Start/End: Original strand, 13072097 - 13072191
Alignment:
| Q |
195 |
tcaaaatcaaacgtcctccaacttaaccattattataaaacccaatatttgaacaaaaactagaagatccatcaacacaaaatacaaacttataa |
289 |
Q |
| |
|
|||||||||| |||||||| | | |||| | |||||| ||||||||| |||||| | ||| |||||||| ||||||||| |||||||||||| |
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|
| T |
13072097 |
tcaaaatcaatcgtcctcccatctcaccaatcttataatacccaatatccgaacaattagtagtagatccattaacacaaaacacaaacttataa |
13072191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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