View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0810_low_13 (Length: 481)
Name: NF0810_low_13
Description: NF0810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0810_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 6 - 447
Target Start/End: Original strand, 1064978 - 1065417
Alignment:
| Q |
6 |
ctccaagaatataattctaatattcaaccatttatctaccaaaattaatcaacacctaaataattcatctatctatcgagaaatcttttacaaaagagaa |
105 |
Q |
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| T |
1064978 |
ctccaacactataattctaatattcaaccatttatctaccaaaattaatcaacacctaaataattcatctatctatcgagaaatcttttacaaaagagaa |
1065077 |
T |
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| Q |
106 |
actaatgatgcatatacaacactcgaaacaaacaatgcaccgaataaggggtgtggcaaaacattgaagaaagtatatgtactaataaatctaacttatg |
205 |
Q |
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| T |
1065078 |
actaatgatgcatatacaacaatcgaaacaaacaatgcaccgaatagggggtgtggcaaaacattgaagaaagtatatgtactaataaatctaacttatg |
1065177 |
T |
|
| Q |
206 |
acaaaataaatgcagcagcaaaacagtttagaagtgtccattttaccaacctgtcacactggtttgattcccaacaaccatttttatattaatgatttta |
305 |
Q |
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| T |
1065178 |
acaaaataaatgcagcagcgaaacagtttagaagtatccattttatcaacctgt--cactggtttgattcccagcaaccatttttatattaatgatttta |
1065275 |
T |
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| Q |
306 |
cgcactacacgataattgaccgtttactgttaggccaaataactaaacatgataatcagtgggtccgtccttgtaccgaagtatatttaccttaaggtag |
405 |
Q |
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| T |
1065276 |
cgcactacacgataattgaccatttactgttaggccaaataactaaatatgataatcagtggatccgtccttgtaccgaagcgtatttaccttaaggtag |
1065375 |
T |
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| Q |
406 |
tttataaacaatcacactccacttaaaaccaaagtaactatg |
447 |
Q |
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| T |
1065376 |
tttataaacaatcacactccatttaaaaccaaagtaactatg |
1065417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 188 - 304
Target Start/End: Original strand, 20820919 - 20821034
Alignment:
| Q |
188 |
taataaatctaactta-tgacaaaataaatgcagcagcaaaacagtttagaagtgtccattttaccaacctgtcacactggtttgattcccaacaaccat |
286 |
Q |
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||||||| ||||||| |||||||||||| ||| || ||||| ||||| ||||||| ||||||||||||||| ||||| || |||||||| ||||||| |
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| T |
20820919 |
taataaagctaacttggtgacaaaataaacgcaacaataaaactgtttaaaagtgtctattttaccaacctgt--cactgattcgattcccatcaaccat |
20821016 |
T |
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| Q |
287 |
ttttatattaatgatttt |
304 |
Q |
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|||||| ||||||||||| |
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| T |
20821017 |
ttttatcttaatgatttt |
20821034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 204 - 303
Target Start/End: Original strand, 30876548 - 30876645
Alignment:
| Q |
204 |
tgacaaaataaatgcagcagcaaaacagtttagaagtgtccattttaccaacctgtcacactggtttgattcccaacaaccatttttatattaatgattt |
303 |
Q |
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| T |
30876548 |
tgacaaaataaatgcaacagcaaaatggtttagaagtgtccattttaccaacttgt--cactggttcgattcccagaaaccatatttatattaatgattt |
30876645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 204 - 303
Target Start/End: Original strand, 30876725 - 30876822
Alignment:
| Q |
204 |
tgacaaaataaatgcagcagcaaaacagtttagaagtgtccattttaccaacctgtcacactggtttgattcccaacaaccatttttatattaatgattt |
303 |
Q |
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|||||||||||||||| |||||| | ||||||||||||||||||||||||| ||| |||||||| |||||||| ||||||| |||||||||||||||| |
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| T |
30876725 |
tgacaaaataaatgcaacagcaacatggtttagaagtgtccattttaccaacttgt--cactggttcgattcccagcaaccatatttatattaatgattt |
30876822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 231 - 304
Target Start/End: Original strand, 42981171 - 42981242
Alignment:
| Q |
231 |
gtttagaagtgtccattttaccaacctgtcacactggtttgattcccaacaaccatttttatattaatgatttt |
304 |
Q |
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| T |
42981171 |
gtttagaagtgttcattttatcaacctgtgac--tggttcaattcccaacaaccatttttatattaatgatttt |
42981242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 190 - 255
Target Start/End: Complemental strand, 23658129 - 23658064
Alignment:
| Q |
190 |
ataaatctaacttatgacaaaataaatgcagcagcaaaacagtttagaagtgtccattttaccaac |
255 |
Q |
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| T |
23658129 |
ataaagctaacttgtgacaaaataaatgcaacaacaaaatggtttagaagtgtccattttaccaac |
23658064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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