View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0810_low_14 (Length: 463)
Name: NF0810_low_14
Description: NF0810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0810_low_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 453
Target Start/End: Complemental strand, 44856426 - 44855989
Alignment:
| Q |
1 |
tttagagttgataaaggagtcaactttgattctgtttacatggaagatatgggtggggacaagtcttcaaggttggtaccaaacatggttaggattatgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44856426 |
tttagagttgataaaggagtcaactttgattctgtttacatggaagatatgggtggggacaagtcttcaaggttggtaccaaacatggttaggattatgg |
44856327 |
T |
|
| Q |
101 |
ttgcacctggtttttatgtctatggtagtgctgttaaatgtaaggttctttgcagatacttgaccaataacctcagcaacaacaaacaagaaaaaggttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
44856326 |
ttgcacctggtttttatgtctatggtagtgctgttaaatgtaaggttctttgcaggtacttgaccaataacctcagcaacaacaaacaagacaaaggttt |
44856227 |
T |
|
| Q |
201 |
aaacccatcaccttaaataaacccannnnnnnnnnnnnnnnnaatgtggaattggaaagtgtactctatttggtttggaatttagaatttggatcaggtt |
300 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44856226 |
aaacccatcaccttaaataaacccattttattttttatttttaatgtggaattggaaagtgtactctatttggtttggaatttagaatttggatcaggtt |
44856127 |
T |
|
| Q |
301 |
ctattgttgttatgattcatggcttggttttttgttgttaaaaagtagtaacttcggtagatattttatagtatgtatttttcatgcttgagttgggata |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44856126 |
ctattgttgttatgattcatggcttggttttttgttgtt--------------------gatattttatagtatgtatttttcatgcttgagttgggata |
44856047 |
T |
|
| Q |
401 |
tgata-----nnnnnnngggtcaacgtgaacaatttggcattttatggttaccctttg |
453 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44856046 |
tgatatgtcggtatatggagtcaacgtgaacaatttggcattttatggttaccctttg |
44855989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1207 times since January 2019
Visitors: 5828