View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0810_low_15 (Length: 462)
Name: NF0810_low_15
Description: NF0810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0810_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Original strand, 30039823 - 30040278
Alignment:
| Q |
1 |
catagcaattcgtttgtggctaagttaaagagtttgaaaagtcagaagaagactatgagtctatgattgtgaatatattgatacgtggcatatgcaacag |
100 |
Q |
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| T |
30039823 |
catagcaattcgtttgtggctaagttaaagagtttgaaa-gtcagaagaagactatgagtctatgattgtgaatatattgatacgtggcatatgcaacag |
30039921 |
T |
|
| Q |
101 |
tattgaattggattagcttctaattaagacaggaaaaataatcaacaaaaattgagcaggaaccacaagtgtcttcctttgttttgtctttatgaaacct |
200 |
Q |
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| T |
30039922 |
tattgaattggattagcttctaattaagacaggaaaaataatcaacaaaaattgagcaggaaccacaagtgtcttcctttgttttgtctttatgaaacct |
30040021 |
T |
|
| Q |
201 |
cattgcatttttgtccttcactacttcctcttcatcctagactttctacacttgactttgtttcttgctagttggtagctagcatgttacatgttacatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30040022 |
cattgcatttttgtccttcactacttcctcttcatcctagactttctacacttgactttgtttcttgctagttggtagctagcatgttacatgttacatg |
30040121 |
T |
|
| Q |
301 |
caatgcataatatcct-------cttcagacaagtatttttgtctgagtgccatataatataatcagcaaattgtcaagaagttgattgagaactatttc |
393 |
Q |
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| T |
30040122 |
caatgcataatatcctttctttgcttgaggcaagtatttttgtctgagtgcc-----atataatcagcaaattgtcaagaagttgattgagaactatttc |
30040216 |
T |
|
| Q |
394 |
taacatggaaatacaaagtgtgtttctctttttgttattcttatgggctcaaattcatctca |
455 |
Q |
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| T |
30040217 |
taacatgaaaatacaaagtgtgtttctctttttgttattcttatgggctcaaattcatctca |
30040278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 207 - 455
Target Start/End: Original strand, 30029855 - 30030091
Alignment:
| Q |
207 |
atttttgtccttcactacttcctcttcatcctagactttctacacttgactttgtttcttgctagttggtagctagcatgttacatgttacatgcaatgc |
306 |
Q |
| |
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|||||| ||||||| |||||||||||||||||| ||||||||||||| |||||| |||||||||||| || ||||||||||||||||| |
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| T |
30029855 |
atttttttccttcattacttcctcttcatcctaaactttctacacttcactttgcttcttgctagtt----------at----catgttacatgcaatgc |
30029940 |
T |
|
| Q |
307 |
ataatatcct-------cttcagacaagtatttttgtctgagtgccatataatataatcagcaaattgtcaagaagttgattgagaactatttctaacat |
399 |
Q |
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|||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30029941 |
ataatatcctttctttgcttgagacaagtatttttgcctgagtgccatat-----aatcagcaaattgtcaagaagttgattgagaactatttctaacat |
30030035 |
T |
|
| Q |
400 |
ggaaatacaaagtgtgtttctctttttgttattcttatgggctcaaattcatctca |
455 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30030036 |
ggaaatacaaagtgtgtttctctttttgttattcttatgggctcaaattcatctca |
30030091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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