View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0810_low_16 (Length: 450)
Name: NF0810_low_16
Description: NF0810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0810_low_16 |
 | |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 12138442 - 12138000
Alignment:
| Q |
1 |
gttatatatattgccatcaggtatcattgactttcttccagtatgattatgatgtaggaaaatatatttttgtttgagatttcttcatgtcaattgtgga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12138442 |
gttatatatattgccatcaggtatcattgactttcttccagtatgattatgatgtaggaaaatatatttttgtttgagatttcttcatgtcaattgtgga |
12138343 |
T |
|
| Q |
101 |
caatcaatagttgtgtgatttatttgaagaatgaagatggagggttcggattacacatagagggtcatagtaccatgttttgtaccacactcaattatat |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12138342 |
caatcaatagttgtg--atttatttgaagaatgaagatggagggttcggattacacatagagggtcatagtaccatgttttgtaccacactcaattatat |
12138245 |
T |
|
| Q |
201 |
atgtatgcgaattcttggagaagggcctaatggaggtcaagacaatgcttgtgcaagagcaagaaagtggattcatgatcatggtggtgtgacacagata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12138244 |
atgtatgcgaattcttggagaagggcctaatggaggtcaagacaatgcttgtgcaagagcaagaaagtggattcatgatcatggtggtgtgacacagata |
12138145 |
T |
|
| Q |
301 |
ccttcatggggaaaaacttggctttcggtatcattcttctctacacaaaataacaattttgaagctaacagacaaacatttaatgtatgttattaatttg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12138144 |
ccttcatggggaaaaacttggctttcggtatcattcttctctacacaaaataacaattttgaagctaacagacaaacatttaatgtatgttattaatttg |
12138045 |
T |
|
| Q |
401 |
aatatgtatcctccacctatagatacttggtgtatattattggag |
445 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||| |
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|
| T |
12138044 |
aatatgtatcctccacctatagatacttggtgtatttgattggag |
12138000 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 122 - 331
Target Start/End: Original strand, 13051840 - 13052049
Alignment:
| Q |
122 |
atttgaagaatgaagatggagggttcggattacacatagagggtcatagtaccatgttttgtaccacactcaattatatatgtatgcgaattcttggaga |
221 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||| |||||||| || |||||||||||||| |||| || |||||||| || ||||||||||||| |
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| T |
13051840 |
atttgaagaatgaagatggagggtggggtctacacattgagggtcacagcaccatgttttgtactgcactgaactatatatgcctgagaattcttggaga |
13051939 |
T |
|
| Q |
222 |
agggcctaatggaggtcaagacaatgcttgtgcaagagcaagaaagtggattcatgatcatggtggtgtgacacagataccttcatggggaaaaacttgg |
321 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||| || || |||||||||||||||||||||||| |
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|
| T |
13051940 |
agggccggatggaggtcaagacaatgcttgtgcaagagcaagaaactggattcgtgatcacggtggtgtaacgcatataccttcatggggaaaaacttgg |
13052039 |
T |
|
| Q |
322 |
ctttcggtat |
331 |
Q |
| |
|
|||||||||| |
|
|
| T |
13052040 |
ctttcggtat |
13052049 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 123 - 330
Target Start/End: Original strand, 162121 - 162328
Alignment:
| Q |
123 |
tttgaagaatgaagatggagggttcggattacacatagagggtcatagtaccatgttttgtaccacactcaattatatatgtatgcgaattcttggagaa |
222 |
Q |
| |
|
|||||||||||||||||| || | || |||| || |||||||| ||||||||||||||||| ||||||| |||||||||||||| |||||||||||| |
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|
| T |
162121 |
tttgaagaatgaagatggtggatgggggctacaaattgagggtcacagtaccatgttttgtactgcactcaactatatatgtatgcggattcttggagaa |
162220 |
T |
|
| Q |
223 |
gggcctaatggaggtcaagacaatgcttgtgcaagagcaagaaagtggattcatgatcatggtggtgtgacacagataccttcatggggaaaaacttggc |
322 |
Q |
| |
|
|| ||| ||||||||||||||||||||||||| ||||| ||||| ||||||| |||||| |||||||| |||| |||||||||||||| |||||||||| |
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|
| T |
162221 |
ggacctgatggaggtcaagacaatgcttgtgctagagccagaaactggattcgtgatcacggtggtgtaacacgtataccttcatgggggaaaacttggc |
162320 |
T |
|
| Q |
323 |
tttcggta |
330 |
Q |
| |
|
|||||||| |
|
|
| T |
162321 |
tttcggta |
162328 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 123 - 330
Target Start/End: Original strand, 102941 - 103148
Alignment:
| Q |
123 |
tttgaagaatgaagatggagggttcggattacacatagagggtcatagtaccatgttttgtaccacactcaattatatatgtatgcgaattcttggagaa |
222 |
Q |
| |
|
||||||||||||||||||||| | || ||||||| |||||||| || |||||||||||||| |||| || |||||||||||||||||||| |||||| |
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|
| T |
102941 |
tttgaagaatgaagatggaggatgggggctacacattgagggtcacagcaccatgttttgtactgcacttaactatatatgtatgcgaattctcggagaa |
103040 |
T |
|
| Q |
223 |
gggcctaatggaggtcaagacaatgcttgtgcaagagcaagaaagtggattcatgatcatggtggtgtgacacagataccttcatggggaaaaacttggc |
322 |
Q |
| |
|
|| ||| |||| |||||||||||||||||||| ||||| ||||| ||||||| | || |||||||| ||| | ||||||||||||||||||||||||| |
|
|
| T |
103041 |
ggacctgatggcggtcaagacaatgcttgtgctagagccagaaactggattcgggcacacggtggtgtcacatatataccttcatggggaaaaacttggc |
103140 |
T |
|
| Q |
323 |
tttcggta |
330 |
Q |
| |
|
|||||||| |
|
|
| T |
103141 |
tttcggta |
103148 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 122 - 330
Target Start/End: Complemental strand, 5671058 - 5670850
Alignment:
| Q |
122 |
atttgaagaatgaagatggagggttcggattacacatagagggtcatagtaccatgttttgtaccacactcaattatatatgtatgcgaattcttggaga |
221 |
Q |
| |
|
|||||||||||||||||||||| | ||| ||||| |||||||||| | || |||||||||||| |||||| || |||||||||||||| |||||||| |
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|
| T |
5671058 |
atttgaagaatgaagatggaggatggggactacacgtagagggtcacaatatcatgttttgtactgtactcaactacatatgtatgcgaatacttggaga |
5670959 |
T |
|
| Q |
222 |
agggcctaatggaggtcaagacaatgcttgtgcaagagcaagaaagtggattcatgatcatggtggtgtgacacagataccttcatggggaaaaacttgg |
321 |
Q |
| |
|
||| || ||||||||| |||| ||||||||||| | ||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||| |||| |
|
|
| T |
5670958 |
aggtccaaatggaggtaaagaaaatgcttgtgctaaagcaagaaaatggattcatgatcatggtggtgtgacatacgtaccttcatggggaaaaatttgg |
5670859 |
T |
|
| Q |
322 |
ctttcggta |
330 |
Q |
| |
|
||||||||| |
|
|
| T |
5670858 |
ctttcggta |
5670850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 122 - 330
Target Start/End: Complemental strand, 5692804 - 5692596
Alignment:
| Q |
122 |
atttgaagaatgaagatggagggttcggattacacatagagggtcatagtaccatgttttgtaccacactcaattatatatgtatgcgaattcttggaga |
221 |
Q |
| |
|
|||||||||||||||||||||| | ||| ||||| |||||||||| |||| |||||||||||| |||||| || ||||| |||||||| |||||||| |
|
|
| T |
5692804 |
atttgaagaatgaagatggaggatggggactacacgtagagggtcacagtatcatgttttgtacagtactcaactacatatgcatgcgaatacttggaga |
5692705 |
T |
|
| Q |
222 |
agggcctaatggaggtcaagacaatgcttgtgcaagagcaagaaagtggattcatgatcatggtggtgtgacacagataccttcatggggaaaaacttgg |
321 |
Q |
| |
|
||| || ||||||||| |||| ||||||||||| | ||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||| |||| |
|
|
| T |
5692704 |
aggtccaaatggaggtaaagaaaatgcttgtgctaaagcaagaaaatggattcatgatcatggtggtgtgacatacgtaccttcatggggaaaattttgg |
5692605 |
T |
|
| Q |
322 |
ctttcggta |
330 |
Q |
| |
|
||||||||| |
|
|
| T |
5692604 |
ctttcggta |
5692596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 122 - 330
Target Start/End: Complemental strand, 5723148 - 5722940
Alignment:
| Q |
122 |
atttgaagaatgaagatggagggttcggattacacatagagggtcatagtaccatgttttgtaccacactcaattatatatgtatgcgaattcttggaga |
221 |
Q |
| |
|
|||||||||||||||||||||| | ||| ||||| |||||||||| |||| ||||||||||||| ||| || || ||||| |||||||| |||||||| |
|
|
| T |
5723148 |
atttgaagaatgaagatggaggatggggactacacgtagagggtcacagtatcatgttttgtaccgtacttaactacatatgcatgcgaatacttggaga |
5723049 |
T |
|
| Q |
222 |
agggcctaatggaggtcaagacaatgcttgtgcaagagcaagaaagtggattcatgatcatggtggtgtgacacagataccttcatggggaaaaacttgg |
321 |
Q |
| |
|
||| || ||||||||| |||| ||||||||||| | ||||||||| ||||||||||||||||||||||||||| | | ||||||||||||||| ||| |
|
|
| T |
5723048 |
aggtccaaatggaggtaaagaaaatgcttgtgctaaagcaagaaaatggattcatgatcatggtggtgtgacatacgtgtcttcatggggaaaaatctgg |
5722949 |
T |
|
| Q |
322 |
ctttcggta |
330 |
Q |
| |
|
||||||||| |
|
|
| T |
5722948 |
ctttcggta |
5722940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 122 - 330
Target Start/End: Complemental strand, 93435 - 93227
Alignment:
| Q |
122 |
atttgaagaatgaagatggagggttcggattacacatagagggtcatagtaccatgttttgtaccacactcaattatatatgtatgcgaattcttggaga |
221 |
Q |
| |
|
||||| |||||||||||||||||| || ||||||| |||||||| || | |||||||| ||| ||||||| || ||||||||||| ||||||||| | |
|
|
| T |
93435 |
atttgcagaatgaagatggagggtgggggctacacattgagggtcacagcatcatgttttctactgcactcaactacatatgtatgcggattcttggaca |
93336 |
T |
|
| Q |
222 |
agggcctaatggaggtcaagacaatgcttgtgcaagagcaagaaagtggattcatgatcatggtggtgtgacacagataccttcatggggaaaaacttgg |
321 |
Q |
| |
|
||| ||| |||| |||||| ||||||||||||| ||||||||| | ||||||| || |||||||||||| ||||| |||||||||||||||||||| ||| |
|
|
| T |
93335 |
aggtcctgatggcggtcaaaacaatgcttgtgctagagcaagacactggattcgtgttcatggtggtgtaacacatataccttcatggggaaaaacatgg |
93236 |
T |
|
| Q |
322 |
ctttcggta |
330 |
Q |
| |
|
||||||||| |
|
|
| T |
93235 |
ctttcggta |
93227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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