View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0810_low_18 (Length: 416)

Name: NF0810_low_18
Description: NF0810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0810_low_18
NF0810_low_18
[»] scaffold0015 (1 HSPs)
scaffold0015 (166-386)||(63509-63731)
[»] chr8 (1 HSPs)
chr8 (170-386)||(36339514-36339732)
[»] chr5 (2 HSPs)
chr5 (167-386)||(17130841-17131062)
chr5 (171-386)||(32243142-32243359)
[»] chr4 (3 HSPs)
chr4 (171-386)||(19752272-19752488)
chr4 (171-386)||(19787318-19787534)
chr4 (171-362)||(45147124-45147315)
[»] chr7 (1 HSPs)
chr7 (167-386)||(35818837-35819057)
[»] chr6 (2 HSPs)
chr6 (19-167)||(29257745-29257896)
chr6 (166-318)||(11417910-11418060)


Alignment Details
Target: scaffold0015 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 166 - 386
Target Start/End: Complemental strand, 63731 - 63509
Alignment:
Q  166 aggcccgggctagcgtgagcatagaaaataggtctctcactgtaaaaatttaattttgtccatcagatatatgaatatattatgtagtggttaggatggt 265  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  63731 aggcccgggctagcgtgagcatagaaaataggtctctcacggtgaaaatttaattttgtccatcagatatataaatatattatgtagtggttaggatggt 63632  T
Q  266 ttactcgaaacctgtcttccaccgggtgtgaaatagtgtccatttgtttttaa--nnnnnnnnnncagtatccgaaatcaataaatgttacagggaaggc 363  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||            |||||||||||||||||||||||||||||||||||    
T  63631 ttactggaaacctgtcttccaccgggtgtgaaacagtgtccatttgtttttaatttttttttcaacagtatccgaaatcaataaatgttacagggaaggc 63532  T
Q  364 tttgctgttcttcggaggatcct 386  Q
    |||||||||||||||||||||||    
T  63531 tttgctgttcttcggaggatcct 63509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 170 - 386
Target Start/End: Original strand, 36339514 - 36339732
Alignment:
Q  170 ccgggctagcgtgagcatagaaaataggtctctcactgtaaaaatttaattttgtccatcagatatatgaatatattatgtagtggttaggatggtttac 269  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  36339514 ccgggctagcgtgagcatagaaaataggtctctcacggtaaaaatttaattttgtccatcagatatataaatatattatgtagtggttaggatggtttac 36339613  T
Q  270 tcgaaacctgtcttccaccgggtgtgaaatagtgtccatttgtttttaa--nnnnnnnnnncagtatccgaaatcaataaatgttacagggaaggctttg 367  Q
    | ||||||||||||||||||||||||||| |||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||    
T  36339614 tggaaacctgtcttccaccgggtgtgaaacagtgtccatttgtttttaatttttttttcaacagtatccgaaatcaataaatgttacagggaaggctttg 36339713  T
Q  368 ctgttcttcggaggatcct 386  Q
    |||||||||||||||||||    
T  36339714 ctgttcttcggaggatcct 36339732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 167 - 386
Target Start/End: Original strand, 17130841 - 17131062
Alignment:
Q  167 ggcccgggctagcgtgagcatagaaaataggtctctcactgtaaaaatttaattttgtccatcagatatatgaatatattatgtagtggttaggatggtt 266  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  17130841 ggcccgggctagcgtgagcatagaaaataggtctctcacggtgaaaatttaattttgtccatcagatatataaatatattatgtagtggttaggatggtt 17130940  T
Q  267 tactcgaaacctgtcttccaccgggtgtgaaatagtgtccatttgtttttaa--nnnnnnnnnncagtatccgaaatcaataaatgttacagggaaggct 364  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||            ||||||||||||||||||||||||||||||||||||    
T  17130941 tactggaaacctgtcttccaccgggtgtgaaacagtgtccatttgtttttaatttttttttcaacagtatccgaaatcaataaatgttacagggaaggct 17131040  T
Q  365 ttgctgttcttcggaggatcct 386  Q
    ||||||||||||||||||||||    
T  17131041 ttgctgttcttcggaggatcct 17131062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 171 - 386
Target Start/End: Original strand, 32243142 - 32243359
Alignment:
Q  171 cgggctagcgtgagcatagaaaataggtctctcactgtaaaaatttaattttgtccatcagatatatgaatatattatgtagtggttaggatggtttact 270  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  32243142 cgggctagcgtgagcatagaaaataggtctctcacggtgaaaatttaattttgtccatcagatatataaatatattatgtagtggttaggatggtttact 32243241  T
Q  271 cgaaacctgtcttccaccgggtgtgaaatagtgtccatttgtttttaa--nnnnnnnnnncagtatccgaaatcaataaatgttacagggaaggctttgc 368  Q
     ||||||||||||||||||||||||||| |||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||    
T  32243242 ggaaacctgtcttccaccgggtgtgaaacagtgtccatttgtttttaatttttttttcaacagtatccgaaatcaataaatgttacagggaaggctttgc 32243341  T
Q  369 tgttcttcggaggatcct 386  Q
    ||||||||||||||||||    
T  32243342 tgttcttcggaggatcct 32243359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 159; Significance: 2e-84; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 171 - 386
Target Start/End: Original strand, 19752272 - 19752488
Alignment:
Q  171 cgggctagcgtgagcatagaaaataggtctctcactgtaaaaatttaattttgtccatcagatatatgaatatattatgtagtggttaggatggtttact 270  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19752272 cgggctagcgtgagcatagaaaataggtctctcacggtgaaaatttaattttgtccatcagatgtatgaatatattatgtagtggttaggatggtttact 19752371  T
Q  271 cgaaacctgtcttccaccgggtgtgaaatagtgtccatttgtttttaa-nnnnnnnnnncagtatccgaaatcaataaatgttacagggaaggctttgct 369  Q
     ||||||||||||||||||||||||||| |||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||    
T  19752372 ggaaacctgtcttccaccgggtgtgaaacagtgtccatttgtttttaattttttttcaacagtatccgaaatcaataaatgttacagggaaggctttgct 19752471  T
Q  370 gttcttcggaggatcct 386  Q
    |||||||||||||||||    
T  19752472 gttcttcggaggatcct 19752488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 171 - 386
Target Start/End: Complemental strand, 19787534 - 19787318
Alignment:
Q  171 cgggctagcgtgagcatagaaaataggtctctcactgtaaaaatttaattttgtccatcagatatatgaatatattatgtagtggttaggatggtttact 270  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19787534 cgggctagcgtgagcatagaaaataggtctctcacggtgaaaatttaattttgtccatcagatgtatgaatatattatgtagtggttaggatggtttact 19787435  T
Q  271 cgaaacctgtcttccaccgggtgtgaaatagtgtccatttgtttttaa-nnnnnnnnnncagtatccgaaatcaataaatgttacagggaaggctttgct 369  Q
     ||||||||||||||||||||||||||| |||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||    
T  19787434 ggaaacctgtcttccaccgggtgtgaaacagtgtccatttgtttttaattttttttcaacagtatccgaaatcaataaatgttacagggaaggctttgct 19787335  T
Q  370 gttcttcggaggatcct 386  Q
    |||||||||||||||||    
T  19787334 gttcttcggaggatcct 19787318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 171 - 362
Target Start/End: Original strand, 45147124 - 45147315
Alignment:
Q  171 cgggctagcgtgagcatagaaaataggtctctcactgtaaaaatttaattttgtccatcagatatatgaatatattatgtagtggttaggatggtttact 270  Q
    ||||||||||||||| || || ||||||||||||| || |||| | ||||||||||||||||||||||| |||||||||||||||| |||||| |||||     
T  45147124 cgggctagcgtgagcgtacaacataggtctctcacggtgaaaactgaattttgtccatcagatatatgattatattatgtagtggtcaggatgttttaca 45147223  T
Q  271 cgaaacctgtcttccaccgggtgtgaaatagtgtccatttgttttt--aannnnnnnnnncagtatccgaaatcaataaatgttacagggaagg 362  Q
     ||||||| |||||||||||  |||||| |||||| ||||||||||  ||          ||||||||||||||||||||| ||||||||||||    
T  45147224 ggaaacctttcttccaccgg--gtgaaacagtgtctatttgtttttaaaaattctgtcaacagtatccgaaatcaataaatcttacagggaagg 45147315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 167 - 386
Target Start/End: Original strand, 35818837 - 35819057
Alignment:
Q  167 ggcccgggctagcgtgagcatagaaaataggtctctcactgtaaaaatttaattttgtccatcagatatatgaatatattatgtagtggttaggatggtt 266  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35818837 ggcccgggctagcgtgagcatagaaaataggtctctcacggtgaaaatttaattttgtccatcagatatataaatatattatgtagtggttaggatggtt 35818936  T
Q  267 tactcgaaacctgtcttccaccgggtgtgaaatagtgtccatttgtttttaa--nnnnnnnnnncagtatccgaaatcaataaatgttacagggaaggct 364  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||            ||||||||||||||||||||||||||||||||||||    
T  35818937 tact-gaaacctgtcttccaccgggtgtgaaacagtgtccatttgtttttaatttttttttcaacagtatccgaaatcaataaatgttacagggaaggct 35819035  T
Q  365 ttgctgttcttcggaggatcct 386  Q
    ||||||||||||||||||||||    
T  35819036 ttgctgttcttcggaggatcct 35819057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 29257896 - 29257745
Alignment:
Q  19 atgatgttgcggagtcttcggtggatggacga---agttgtcgaaactataagaaaaatgaatgaagtatctatgaaaaggaaaggatagcaaataagaa 115  Q
    ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  29257896 atgatgttgcggagtcttcggtggatggacgacgaagttgtcgaaactataagaaaaatgaatgaagtatctatgaaaaggaaaggataacaaataagaa 29257797  T
Q  116 ttggtggagtctaagtggaatgtgatccacattaaactatcactaacattag 167  Q
    ||| |||| ||||||||||||||||||||||||||| |||||||||||||||    
T  29257796 ttgctggaatctaagtggaatgtgatccacattaaattatcactaacattag 29257745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 166 - 318
Target Start/End: Complemental strand, 11418060 - 11417910
Alignment:
Q  166 aggcccgggctagcgtgagcatagaaaataggtctctcactgtaaaaatttaattttgtccatcagatatatgaatatattatgtagtggttaggatggt 265  Q
    |||| ||||||||||||||| || ||  |||||||||||| || |||| | ||| |||| |||||||||||||| |||||||||||||| | |||||| |    
T  11418060 aggctcgggctagcgtgagcgtacaacgtaggtctctcacggtgaaaactgaatcttgttcatcagatatatgattatattatgtagtgatcaggatgtt 11417961  T
Q  266 ttactcgaaacctgtcttccaccgggtgtgaaatagtgtccatttgtttttaa 318  Q
    ||||  ||||||| |||||||| ||  |||||| |||||| ||||||||||||    
T  11417960 ttacaggaaacctttcttccactgg--gtgaaacagtgtctatttgtttttaa 11417910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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