View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0810_low_2 (Length: 625)
Name: NF0810_low_2
Description: NF0810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0810_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 46 - 562
Target Start/End: Original strand, 50651811 - 50652326
Alignment:
| Q |
46 |
gcaacgtctcttgtcccgcaccaccaaggacacagatcaggaacgtgcaggcccttatcttgtaaacgcacacggataggaacacagtcacgcaccacac |
145 |
Q |
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| T |
50651811 |
gcaacgtctcttgtcccgcaccaccaaggacacagatcaggaacgtgcgggcccttatcttgtaaacgcacacgaataggaacacagtcacgcaccacac |
50651910 |
T |
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| Q |
146 |
gacacataaaagagtgaaattttggaggcgcagccagtttccacagcaacttccaataacctggcaccttatacgcagccgtatccaccattttcttcct |
245 |
Q |
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| T |
50651911 |
gacacataaaagagtgaaattttggaggcacagccagtttccacagcaacttccaataacctggcaccttatacgcagtcgtatccatcattttcttcct |
50652010 |
T |
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| Q |
246 |
aataaatggttattatgtcaccaactccggtttcaacttttctaagcgactataagaaatgttggtatatattccttgaaccactaaagcaatgcagctc |
345 |
Q |
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| T |
50652011 |
aataaatggttattatgtcacgaagtccggtttcaacttttctaagcgactataagaaatgttggtatatattccttgaaccactaaagcaatgcagctc |
50652110 |
T |
|
| Q |
346 |
atgaacaaagacagaataagtagagcctgtctttcgnnnnnnnntaagtaccagaagtggaaaaatgtattagcagtacagtatactagtggcagcctgg |
445 |
Q |
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| T |
50652111 |
atgaac-aagacagaataagtagagcctgtctttcgaaaaaaaataagtaccagaagtggaaaaatatattagcagtacagtatactagtggcagcctgg |
50652209 |
T |
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| Q |
446 |
taggtccccttttgtgcaatccttacatgctaaaggctgcaggccagttgaaattatcacttttcttgatagaagcagaacatgttttgcttaaatgaaa |
545 |
Q |
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| T |
50652210 |
taggtccccttttgtgcaatccttacatgctaaaggctgcaggccagttgaaatgatcacttttcttgatagaagcagaacatgttttgcttaaatgaaa |
50652309 |
T |
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| Q |
546 |
atgagatataaatgctc |
562 |
Q |
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| T |
50652310 |
atgagatataaatgctc |
50652326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 563 - 614
Target Start/End: Original strand, 50652357 - 50652405
Alignment:
| Q |
563 |
ttaaggaacgcggattccctaccggcaggggataatgtgttcacgcattcat |
614 |
Q |
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| T |
50652357 |
ttaaggaatgcggattccctaccgtcagggg---atgtgttcacgcattcat |
50652405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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