View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0810_low_20 (Length: 410)

Name: NF0810_low_20
Description: NF0810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0810_low_20
NF0810_low_20
[»] chr2 (8 HSPs)
chr2 (30-403)||(29863283-29863656)
chr2 (45-403)||(29848022-29848374)
chr2 (164-324)||(9510081-9510241)
chr2 (164-324)||(18655082-18655242)
chr2 (164-324)||(45018214-45018374)
chr2 (164-321)||(27166300-27166457)
chr2 (164-252)||(24992516-24992604)
chr2 (174-320)||(22906019-22906165)
[»] chr7 (13 HSPs)
chr7 (164-324)||(16138501-16138661)
chr7 (164-324)||(5388232-5388392)
chr7 (164-324)||(6538341-6538501)
chr7 (164-324)||(8504913-8505073)
chr7 (164-324)||(9541557-9541717)
chr7 (164-324)||(26354616-26354776)
chr7 (164-324)||(32102244-32102404)
chr7 (164-324)||(46500978-46501138)
chr7 (164-252)||(610195-610283)
chr7 (209-324)||(44901266-44901381)
chr7 (154-275)||(2470202-2470324)
chr7 (164-240)||(44901163-44901239)
chr7 (164-240)||(15178997-15179073)
[»] chr3 (8 HSPs)
chr3 (164-331)||(6426171-6426338)
chr3 (164-324)||(8976710-8976870)
chr3 (164-324)||(9540999-9541159)
chr3 (164-324)||(16405473-16405633)
chr3 (164-252)||(19688260-19688348)
chr3 (164-275)||(25507776-25507887)
chr3 (164-306)||(28361064-28361206)
chr3 (164-311)||(2158713-2158860)
[»] chr5 (11 HSPs)
chr5 (154-306)||(18711448-18711601)
chr5 (164-324)||(18383604-18383764)
chr5 (164-324)||(26198642-26198802)
chr5 (164-324)||(27416012-27416172)
chr5 (164-324)||(33943184-33943344)
chr5 (164-252)||(724933-725021)
chr5 (154-306)||(15327168-15327321)
chr5 (164-321)||(20951725-20951882)
chr5 (185-347)||(19382074-19382235)
chr5 (164-306)||(24416090-24416232)
chr5 (164-275)||(30451006-30451117)
[»] scaffold0254 (1 HSPs)
scaffold0254 (164-324)||(14296-14456)
[»] chr8 (5 HSPs)
chr8 (164-324)||(21209287-21209447)
chr8 (164-324)||(14888006-14888166)
chr8 (167-306)||(45495609-45495748)
chr8 (164-293)||(22834602-22834731)
chr8 (164-275)||(20747882-20747993)
[»] chr6 (9 HSPs)
chr6 (164-324)||(16901810-16901970)
chr6 (164-324)||(18163929-18164089)
chr6 (164-324)||(24928482-24928642)
chr6 (164-324)||(31360683-31360843)
chr6 (164-252)||(8998309-8998397)
chr6 (170-321)||(9007484-9007635)
chr6 (164-288)||(27747403-27747527)
chr6 (154-252)||(11377249-11377347)
chr6 (175-240)||(29563207-29563272)
[»] chr4 (7 HSPs)
chr4 (164-324)||(6696082-6696242)
chr4 (164-252)||(115611-115699)
chr4 (164-324)||(16268920-16269080)
chr4 (167-252)||(14935764-14935849)
chr4 (164-321)||(17155280-17155437)
chr4 (164-306)||(54696159-54696301)
chr4 (174-306)||(26815762-26815894)
[»] chr1 (1 HSPs)
chr1 (164-324)||(16158747-16158907)
[»] scaffold0021 (1 HSPs)
scaffold0021 (164-306)||(166741-166882)
[»] scaffold0096 (1 HSPs)
scaffold0096 (164-252)||(52478-52566)
[»] scaffold0003 (1 HSPs)
scaffold0003 (174-324)||(148887-149037)
[»] scaffold0611 (1 HSPs)
scaffold0611 (164-324)||(1813-1973)
[»] scaffold0028 (2 HSPs)
scaffold0028 (164-252)||(85284-85372)
scaffold0028 (164-306)||(100673-100815)
[»] scaffold0049 (2 HSPs)
scaffold0049 (164-275)||(18451-18562)
scaffold0049 (167-321)||(84908-85062)
[»] scaffold0010 (1 HSPs)
scaffold0010 (164-390)||(260332-260557)
[»] scaffold0500 (1 HSPs)
scaffold0500 (164-252)||(9406-9494)
[»] scaffold0313 (1 HSPs)
scaffold0313 (174-321)||(13431-13578)
[»] scaffold0058 (1 HSPs)
scaffold0058 (221-324)||(62691-62794)
[»] scaffold0141 (1 HSPs)
scaffold0141 (167-321)||(29750-29904)
[»] scaffold0142 (1 HSPs)
scaffold0142 (164-237)||(33309-33382)
[»] scaffold0163 (1 HSPs)
scaffold0163 (164-311)||(19363-19510)


Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 30 - 403
Target Start/End: Complemental strand, 29863656 - 29863283
Alignment:
Q  30 ttattttcttcaaacaaagaattcataatgagaaatatctatatagatcatctcagtgagaaatgatcatggagaggaattttaaaatgaatggttcaag 129  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29863656 ttatcttcttcaaacaaagaattcagaatgagaaatatctatatagatcatctcagtgagaaatgatcatggagaggaattttaaaatgaatggttcaag 29863557  T
Q  130 atatannnnnnnatgagaatgatgtctcttataattttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaa 229  Q
    |||||       |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29863556 atatatttttttatgagaatgatgtctcttataattttcccgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaa 29863457  T
Q  230 atggctagaactcttttaaatgaggccaacgttgaaaaatactttttgacagaaaccattaacatttcttgctatattctgagtagagtttctattaaaa 329  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29863456 atggctagaactcttttaaatgaggccaatgttgaaaaatactttttgacagaaaccattaacatttcttgctatattttgagtagagtttctattaaaa 29863357  T
Q  330 agaatttttaacaaaacttcaatcgaactatggaaaaatagaaaatcaaatatttcttattgccatattgttgg 403  Q
    ||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  29863356 agattttttaacaaaacttcattcgaactttggaaaaatagaaaatcaaatatttcttattgccatatttttgg 29863283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 45 - 403
Target Start/End: Complemental strand, 29848374 - 29848022
Alignment:
Q  45 aaagaattcataatgagaaatatctatatagatcatctcagtgagaaatgatcatggagaggaattttaaaatgaatggttcaagatatannnnnnnatg 144  Q
    |||||||| | ||||||||| |||||||  |||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||| ||        |||    
T  29848374 aaagaatttagaatgagaaagatctata--gatcatct-agtgagaaatgatcatggagaagaattttaaaatgaatgcttcaagacat--ttttttatg 29848280  T
Q  145 agaatgatgtctcttataattttcctgtccaagaacacctcaa-caaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactct 243  Q
    |||||||| ||||||||||||||| |||| || ||||||| || | |||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  29848279 agaatgatatctcttataattttcatgtctaa-aacacctaaaacgaaatgaagttgttaaaaagataaatataacattgcaagaaatggctataactct 29848181  T
Q  244 tttaaatgaggccaacgttgaaaaatactttttgacagaaaccattaacatttcttgctatattctgagtagagtttctattaaaaagaatttttaacaa 343  Q
    ||||||||||| ||  |||||||||||||||| | |   ||| || |||||||||||||||||||||||||||||||| |||| ||| | |||||   ||    
T  29848180 tttaaatgaggtcat-gttgaaaaatacttttggtctttaacaatcaacatttcttgctatattctgagtagagtttcaattagaaatattttttttaaa 29848082  T
Q  344 aacttcaatcgaactatggaaaaatagaaaatcaaatatttcttattgccatattgttgg 403  Q
    ||||||| | ||||| ||||||||||||||| ||||||||||||||||||||||| ||||    
T  29848081 aacttcattggaactttggaaaaatagaaaaccaaatatttcttattgccatatttttgg 29848022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 164 - 324
Target Start/End: Complemental strand, 9510241 - 9510081
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||| ||||||| || |||||||||| ||||||| |||  ||||||| ||| |||||||||||||| |||||  | ||||||||  | || ||||    
T  9510241 ttttcttgtgcaagaactccacaacaaaatggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttg 9510142  T
Q  264 aaaaatactttttgacagaaaccattaacatttcttgctatattctgagtagagtttctat 324  Q
    |||| ||||||| | ||||| |||||||||  ||||| || ||| ||| ||||||||||||    
T  9510141 aaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctat 9510081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 164 - 324
Target Start/End: Original strand, 18655082 - 18655242
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||| ||||||| || |||||||||| ||||||| |||  ||||||| ||| |||||||||||||| |||||  | ||||||||  | || ||||    
T  18655082 ttttcttgtgcaagaactccacaacaaaatggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttg 18655181  T
Q  264 aaaaatactttttgacagaaaccattaacatttcttgctatattctgagtagagtttctat 324  Q
    |||| ||||||| | ||||| |||||||||  ||||| || ||| ||| ||||||||||||    
T  18655182 aaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctat 18655242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 164 - 324
Target Start/End: Original strand, 45018214 - 45018374
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||| ||||||| || |||||||||| ||||||| |||  ||||||| ||| |||||||||||||| |||||  | ||||||||  | || ||||    
T  45018214 ttttcttgtgcaagaactccacaacaaaatggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttg 45018313  T
Q  264 aaaaatactttttgacagaaaccattaacatttcttgctatattctgagtagagtttctat 324  Q
    |||| ||||||| | ||||| |||||||||  ||||| || ||| ||| ||||||||||||    
T  45018314 aaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctat 45018374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 164 - 321
Target Start/End: Complemental strand, 27166457 - 27166300
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||| ||||||| || |||||||||| ||||||| |||  ||||||| ||| || |||||||||||||||||  | ||||||||  | || ||||    
T  27166457 ttttcttgtgcaagaactccacaacaaaatggagttgttgaaagaaaaaatagaactttacaagaaatggctagaaccatgttaaatgaatcaaatgttg 27166358  T
Q  264 aaaaatactttttgacagaaaccattaacatttcttgctatattctgagtagagtttc 321  Q
    || | || |||| | ||||| |||||||||  |||||||| ||| ||| |||||||||    
T  27166357 aagattatttttgggcagaagccattaacacatcttgctacattttgaatagagtttc 27166300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 164 - 252
Target Start/End: Original strand, 24992516 - 24992604
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatga 252  Q
    ||||| ||||| ||||| ||||||||||||| | ||||| |||  ||||||| ||| |||||||||||||| |||||| ||||||||||    
T  24992516 ttttcttgtcctagaactcctcaacaaaatggatttgttgaaagaaaaaatagaactttgcaagaaatggcaagaactattttaaatga 24992604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 174 - 320
Target Start/End: Original strand, 22906019 - 22906165
Alignment:
Q  174 caagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttgaaaaatactt 273  Q
    ||||||| || |||||||||| ||||||| |||  ||||||| ||| || |||||||||||||||||  | ||||||||  | || |||||| | || ||    
T  22906019 caagaactccacaacaaaatggagttgttgaaagaaaaaatagaactttacaagaaatggctagaaccatgttaaatgaatcaaatgttgaagattattt 22906118  T
Q  274 tttgacagaaaccattaacatttcttgctatattctgagtagagttt 320  Q
    || | ||||| |||||||||  |||||||| ||| ||| ||||||||    
T  22906119 ttgggcagaagccattaacacatcttgctacattttgaatagagttt 22906165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 164 - 324
Target Start/End: Complemental strand, 16138661 - 16138501
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||| ||||||| || |||||||||| ||||||| |||  ||||||| ||| |||||||||||||| |||||  | ||||||||  | || ||||    
T  16138661 ttttcttgtgcaagaactccacaacaaaatggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttg 16138562  T
Q  264 aaaaatactttttgacagaaaccattaacatttcttgctatattctgagtagagtttctat 324  Q
    |||| ||||||| | ||||| ||||||||| |||||| || ||| ||| ||||||||||||    
T  16138561 aaaattacttttgggcagaagccattaacacttcttgttacattttgaatagagtttctat 16138501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 164 - 324
Target Start/End: Complemental strand, 5388392 - 5388232
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||| ||||||| || |||||||||| ||||||| |||  ||||||| ||| |||||||||||||| |||||  | ||||||||  | || ||||    
T  5388392 ttttcttgtgcaagaactccacaacaaaatggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttg 5388293  T
Q  264 aaaaatactttttgacagaaaccattaacatttcttgctatattctgagtagagtttctat 324  Q
    |||| ||||||| | ||||| |||||||||  ||||| || ||| ||| ||||||||||||    
T  5388292 aaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctat 5388232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 164 - 324
Target Start/End: Original strand, 6538341 - 6538501
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||| ||||||| || |||||||||| ||||||| |||  ||||||| ||| |||||||||||||| |||||  | ||||||||  | || ||||    
T  6538341 ttttcttgtgcaagaactccacaacaaaatggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttg 6538440  T
Q  264 aaaaatactttttgacagaaaccattaacatttcttgctatattctgagtagagtttctat 324  Q
    |||| ||||||| | ||||| |||||||||  ||||| || ||| ||| ||||||||||||    
T  6538441 aaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctat 6538501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 164 - 324
Target Start/End: Original strand, 8504913 - 8505073
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||| ||||||| || |||||||||| ||||||| |||  ||||||| ||| |||||||||||||| |||||  | ||||||||  | || ||||    
T  8504913 ttttcttgtgcaagaactccacaacaaaatggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttg 8505012  T
Q  264 aaaaatactttttgacagaaaccattaacatttcttgctatattctgagtagagtttctat 324  Q
    |||| ||||||| | ||||| |||||||||  ||||| || ||| ||| ||||||||||||    
T  8505013 aaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctat 8505073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 164 - 324
Target Start/End: Complemental strand, 9541717 - 9541557
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||| ||||||| || |||||||||| ||||||| |||  ||||||| ||| |||||||||||||| |||||  | ||||||||  | || ||||    
T  9541717 ttttcttgtgcaagaactccacaacaaaatggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttg 9541618  T
Q  264 aaaaatactttttgacagaaaccattaacatttcttgctatattctgagtagagtttctat 324  Q
    |||| ||||||| | ||||| |||||||||  ||||| || ||| ||| ||||||||||||    
T  9541617 aaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctat 9541557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 164 - 324
Target Start/End: Complemental strand, 26354776 - 26354616
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||| ||||||| || |||||||||| ||||||| |||  ||||||| ||| |||||||||||||| |||||  | ||||||||  | || ||||    
T  26354776 ttttcttgtgcaagaactccacaacaaaatggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttg 26354677  T
Q  264 aaaaatactttttgacagaaaccattaacatttcttgctatattctgagtagagtttctat 324  Q
    |||| ||||||| | ||||| |||||||||  ||||| || ||| ||| ||||||||||||    
T  26354676 aaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctat 26354616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 164 - 324
Target Start/End: Original strand, 32102244 - 32102404
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||| ||||||| || |||||||||| ||||||| |||  ||||||| ||| |||||||||||||| |||||  | ||||||||  | || ||||    
T  32102244 ttttcttgtgcaagaactccacaacaaaatggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttg 32102343  T
Q  264 aaaaatactttttgacagaaaccattaacatttcttgctatattctgagtagagtttctat 324  Q
    |||| ||||||| | ||||| |||||||||  ||||| || ||| ||| ||||||||||||    
T  32102344 aaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctat 32102404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 164 - 324
Target Start/End: Original strand, 46500978 - 46501138
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||| ||||||| || |||||||||| ||||||| |||  ||||||| ||| |||||||||||||| |||||  | ||||||||  | || ||||    
T  46500978 ttttcttgtgcaagaactccacaacaaaatggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttg 46501077  T
Q  264 aaaaatactttttgacagaaaccattaacatttcttgctatattctgagtagagtttctat 324  Q
    |||| ||||||| | ||||| |||||||||  ||||| || ||| ||| ||||||||||||    
T  46501078 aaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctat 46501138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 164 - 252
Target Start/End: Original strand, 610195 - 610283
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatga 252  Q
    ||||||||||| ||||| ||||||||||||| ||||||| |||  |||||||  || |||||||||||||| |||||| ||||||||||    
T  610195 ttttcctgtcctagaactcctcaacaaaatggagttgttgaaagaaaaaataggactttgcaagaaatggcaagaactattttaaatga 610283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 324
Target Start/End: Original strand, 44901266 - 44901381
Alignment:
Q  209 aaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttgaaaaatactttttgacagaaaccattaacatttcttgctatattc 308  Q
    ||||||| ||| |||||||||||||| |||||  | ||||||||  | || |||||||| ||||||| | ||||| |||||||||  ||||| || |||     
T  44901266 aaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttgaaaattacttttgggcagaagccattaacacatcttgttacattt 44901365  T
Q  309 tgagtagagtttctat 324  Q
    ||| ||||||||||||    
T  44901366 tgaatagagtttctat 44901381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 275
Target Start/End: Original strand, 2470202 - 2470324
Alignment:
Q  154 tctcttataattttcc-tgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatga 252  Q
    ||||| |||||||||| | ||||| ||| |||||| |||||  ||||||| |||  ||||||| |||||||| |  |||| || |||||||||| ||| |    
T  2470202 tctctcataattttccctatccaaaaactcctcaataaaattgagttgtttaaagaaaaaatagaacattgcgatgaatgactggaactcttttgaataa 2470301  T
Q  253 ggccaacgttgaaaaatactttt 275  Q
    |||||| ||| ||||||||||||    
T  2470302 ggccaatgttaaaaaatactttt 2470324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 240
Target Start/End: Original strand, 44901163 - 44901239
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaac 240  Q
    ||||| ||| ||||||| || |||||||||| ||||||| |||  ||||||| ||| |||||||||||||| |||||    
T  44901163 ttttcttgtgcaagaactccacaacaaaatggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaac 44901239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 240
Target Start/End: Original strand, 15178997 - 15179073
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaac 240  Q
    ||||| ||| ||||||| || |||||||||| ||||||| |||  ||||||| |||| | ||||||||||| |||||    
T  15178997 ttttcatgtgcaagaactccacaacaaaatggagttgttgaaagaaaaaatagaacactccaagaaatggcaagaac 15179073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 164 - 331
Target Start/End: Original strand, 6426171 - 6426338
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||| ||||||| || |||||||||| ||||||| |||  ||||||| ||| |||||||||||||| |||||  | ||||||||  | || ||||    
T  6426171 ttttcttgtgcaagaactccacaacaaaatgtagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttg 6426270  T
Q  264 aaaaatactttttgacagaaaccattaacatttcttgctatattctgagtagagtttctattaaaaag 331  Q
    |||| ||||||| | ||||| |||||||||  ||||| || ||| ||| |||||||||||| ||||||    
T  6426271 aaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctataaaaaag 6426338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 164 - 324
Target Start/End: Original strand, 8976710 - 8976870
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||| ||||||| || |||||||||| ||||||| |||  ||||||| ||| |||||||||||||| |||||  | ||||||||  | || ||||    
T  8976710 ttttcttgtgcaagaactccacaacaaaatggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttg 8976809  T
Q  264 aaaaatactttttgacagaaaccattaacatttcttgctatattctgagtagagtttctat 324  Q
    |||| ||||||| | ||||| |||||||||  ||||| || ||| ||| ||||||||||||    
T  8976810 aaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctat 8976870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 164 - 324
Target Start/End: Original strand, 9540999 - 9541159
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||| ||||||| || |||||||||| ||||||| |||  ||||||| ||| |||||||||||||| |||||  | ||||||||  | || ||||    
T  9540999 ttttcttgtgcaagaactccacaacaaaatggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttg 9541098  T
Q  264 aaaaatactttttgacagaaaccattaacatttcttgctatattctgagtagagtttctat 324  Q
    |||| ||||||| | ||||| |||||||||  ||||| || ||| ||| ||||||||||||    
T  9541099 aaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctat 9541159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 164 - 324
Target Start/End: Original strand, 16405473 - 16405633
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||| ||||||| || |||||||||| ||||||| |||  ||||||| ||| |||||||||||||| |||||  | ||||||||  | || ||||    
T  16405473 ttttcttgtgcaagaactccacaacaaaatggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttg 16405572  T
Q  264 aaaaatactttttgacagaaaccattaacatttcttgctatattctgagtagagtttctat 324  Q
    |||| ||||||| | ||||| |||||||||  ||||| || ||| ||| ||||||||||||    
T  16405573 aaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctat 16405633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 164 - 252
Target Start/End: Original strand, 19688260 - 19688348
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatga 252  Q
    ||||| ||||| ||||| ||||||||||||| ||||||| | |  ||||||| ||| |||||||||||||| |||||| ||||||||||    
T  19688260 ttttcttgtcctagaactcctcaacaaaatggagttgttgatagaaaaaatagaactttgcaagaaatggcaagaactattttaaatga 19688348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 164 - 275
Target Start/End: Complemental strand, 25507887 - 25507776
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||||| |||||||||||||||||||  |||||  ||| ||||||||  || ||||||||||| || |||||| ||||||||||  | || ||||    
T  25507887 ttttcttgtcctagaacacctcaacaaaatggtgttgtagaaaggaaaaataggacgttgcaagaaattgcaagaactattttaaatgaatcaaatgttg 25507788  T
Q  264 aaaaatactttt 275  Q
    ||||||| ||||    
T  25507787 aaaaatattttt 25507776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 306
Target Start/End: Complemental strand, 28361206 - 28361064
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||| ||||||| || |||||||||| ||||||| |||  ||||||| |||| | ||||||||||| |||||  | ||||||||  | || || |    
T  28361206 ttttcatgtgcaagaactccacaacaaaatggagttgttgaaagaaaaaatagaacactccaagaaatggcaagaacaatgttaaatgaatcaaatgtag 28361107  T
Q  264 aaaaatactttttgacagaaaccattaacatttcttgctatat 306  Q
    |||||||||||| | | ||| |||| || | ||||||||||||    
T  28361106 aaaaatacttttgggctgaagccataaatacttcttgctatat 28361064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 311
Target Start/End: Original strand, 2158713 - 2158860
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||||| ||||| |||||||||||||  || ||| |||  ||||||| ||| || ||||||||||| |||||  | ||||||||  | || ||||    
T  2158713 ttttcttgtcccagaactcctcaacaaaatggtgtagttgaaagaaaaaatagaactttacaagaaatggccagaaccatgttaaatgaatcaaatgttg 2158812  T
Q  264 aaaaatactttttgacagaaaccattaacatttcttgctatattctga 311  Q
    ||||||| |||| | | ||| | || ||||  ||||||||||||||||    
T  2158813 aaaaatatttttgggctgaagcaataaacacatcttgctatattctga 2158860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 154 - 306
Target Start/End: Original strand, 18711448 - 18711601
Alignment:
Q  154 tctcttataattt-tcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatga 252  Q
    ||||| ||||||| |||||||| |||||||||||||||||||  |||||  ||| |||||||| |||| ||||||||||||| |||||| | ||||||||    
T  18711448 tctctcataatttctcctgtcctagaacacctcaacaaaatggtgttgtagaaaggaaaaatagaacactgcaagaaatggcaagaactatcttaaatga 18711547  T
Q  253 ggccaacgttgaaaaatactttttgacagaaaccattaacatttcttgctatat 306  Q
      | ||||| |||||||| |||| | ||||| |||| || |  |||||||||||    
T  18711548 atcaaacgtagaaaaatatttttgggcagaagccataaatacctcttgctatat 18711601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 164 - 324
Target Start/End: Original strand, 18383604 - 18383764
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||| ||||||| || |||||||||| ||||||| |||  ||||||| ||| |||||||||||||| |||||  | ||||||||  | || ||||    
T  18383604 ttttcttgtgcaagaactccacaacaaaatggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttg 18383703  T
Q  264 aaaaatactttttgacagaaaccattaacatttcttgctatattctgagtagagtttctat 324  Q
    |||| ||||||| | ||||| |||||||||  ||||| || ||| ||| ||||||||||||    
T  18383704 aaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctat 18383764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 164 - 324
Target Start/End: Complemental strand, 26198802 - 26198642
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||| ||||||| || |||||||||| ||||||| |||  ||||||| ||| |||||||||||||| |||||  | ||||||||  | || ||||    
T  26198802 ttttcttgtgcaagaactccacaacaaaatggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttg 26198703  T
Q  264 aaaaatactttttgacagaaaccattaacatttcttgctatattctgagtagagtttctat 324  Q
    |||| ||||||| | ||||| |||||||||  ||||| || ||| ||| ||||||||||||    
T  26198702 aaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctat 26198642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 164 - 324
Target Start/End: Original strand, 27416012 - 27416172
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||| ||||||| || |||||||||| ||||||| |||  ||||||| ||| |||||||||||||| |||||  | ||||||||  | || ||||    
T  27416012 ttttcttgtgcaagaactccacaacaaaatggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttg 27416111  T
Q  264 aaaaatactttttgacagaaaccattaacatttcttgctatattctgagtagagtttctat 324  Q
    |||| ||||||| | ||||| |||||||||  ||||| || ||| ||| ||||||||||||    
T  27416112 aaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctat 27416172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 164 - 324
Target Start/End: Original strand, 33943184 - 33943344
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||| ||||||| || |||||||||| ||||||| |||  ||||||| ||| |||||||||||||| |||||  | ||||||||  | || ||||    
T  33943184 ttttcttgtgcaagaactccacaacaaaatggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttg 33943283  T
Q  264 aaaaatactttttgacagaaaccattaacatttcttgctatattctgagtagagtttctat 324  Q
    |||| ||||||| | ||||| |||||||||  ||||| || ||| ||| ||||||||||||    
T  33943284 aaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctat 33943344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 164 - 252
Target Start/End: Complemental strand, 725021 - 724933
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatga 252  Q
    ||||||||||| ||||| ||||||||||||| ||||||| |||  |||||||  || |||||||||||||| |||||| ||||||||||    
T  725021 ttttcctgtcctagaactcctcaacaaaatggagttgttgaaagaaaaaataggactttgcaagaaatggcaagaactattttaaatga 724933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 154 - 306
Target Start/End: Complemental strand, 15327321 - 15327168
Alignment:
Q  154 tctcttataattt-tcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatga 252  Q
    ||||| ||||||| |||||||| |||||||||||||| ||||  |||||  ||| |||||||| |||| | ||||||||||| |||||| | ||||||||    
T  15327321 tctctcataatttctcctgtcctagaacacctcaacagaatggtgttgtagaaaggaaaaatagaacactacaagaaatggcaagaactatcttaaatga 15327222  T
Q  253 ggccaacgttgaaaaatactttttgacagaaaccattaacatttcttgctatat 306  Q
      | ||||| |||||||| |||| | ||||| |||| || |  |||||||||||    
T  15327221 atcaaacgtagaaaaatatttttgggcagaagccataaatacctcttgctatat 15327168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 164 - 321
Target Start/End: Original strand, 20951725 - 20951882
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||| ||||||| || |||||||||| ||||||| |||  ||||||| ||| || |||||||||||||||||  | ||||||||  | || ||||    
T  20951725 ttttcttgtgcaagaactccacaacaaaatggagttgttgaaagaaaaaatagaactttacaagaaatggctagaaccatgttaaatgaatcaaatgttg 20951824  T
Q  264 aaaaatactttttgacagaaaccattaacatttcttgctatattctgagtagagtttc 321  Q
    || | || |||| | ||||| |||||||||  |||||||| ||| ||| |||||||||    
T  20951825 aagattatttttgggcagaagccattaacacatcttgctacattttgaatagagtttc 20951882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 347
Target Start/End: Complemental strand, 19382235 - 19382074
Alignment:
Q  185 caacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttgaaaaatactttttgacagaaa 284  Q
    |||||||||| ||||||| ||| |||||||| ||| |||||||||||||| |||||  | ||||||||  | || |||||| | ||||||| | | |||     
T  19382235 caacaaaatggagttgttgaaaggaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttgaagattacttttcggcggaag 19382136  T
Q  285 ccattaacatttcttgctatattctgagtagagtttctattaaaaagaatttttaacaaaact 347  Q
    ||||||| |  ||||| || ||| ||| ||||||||| || | |||| ||| |||||||||||    
T  19382135 ccattaatacatcttgttacattttgaatagagtttcaataagaaag-attcttaacaaaact 19382074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 306
Target Start/End: Original strand, 24416090 - 24416232
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||| ||||||| || |||||||||| ||||||| |||  ||||||| |||| | ||||||||||| |||||  | ||||||||  | || || |    
T  24416090 ttttcatgtgcaagaactccacaacaaaatggagttgttgaaagaaaaaatagaacactccaagaaatggcaagaacaatgttaaatgaatcaaatgtag 24416189  T
Q  264 aaaaatactttttgacagaaaccattaacatttcttgctatat 306  Q
    |||||||||||| | | ||| |||| || | ||||||||||||    
T  24416190 aaaaatacttttgggctgaagccataaatacttcttgctatat 24416232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 275
Target Start/End: Complemental strand, 30451117 - 30451006
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||| ||||||| || |||||||||| ||||||| |||  ||||||| |||| | ||||||||||| |||||  | ||||||||  | || || |    
T  30451117 ttttcatgtgcaagaactccacaacaaaatggagttgttgaaagaaaaaatagaacactccaagaaatggcaagaacaatgttaaatgaatcaaatgtag 30451018  T
Q  264 aaaaatactttt 275  Q
    ||||||||||||    
T  30451017 aaaaatactttt 30451006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 164 - 324
Target Start/End: Complemental strand, 14456 - 14296
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||| ||||||| || |||||||||| ||||||| |||  ||||||| ||| |||||||||||||| |||||  | ||||||||  | || ||||    
T  14456 ttttcttgtgcaagaactccacaacaaaatggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttg 14357  T
Q  264 aaaaatactttttgacagaaaccattaacatttcttgctatattctgagtagagtttctat 324  Q
    |||| ||||||| | ||||| |||||||||  ||||| || ||| ||| ||||||||||||    
T  14356 aaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctat 14296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 164 - 324
Target Start/End: Complemental strand, 21209447 - 21209287
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||| ||||||| || |||||||||| ||||||| |||  ||||||| ||| |||||||||||||| |||||  | ||||||||  | || ||||    
T  21209447 ttttcttgtgcaagaactccacaacaaaatggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttg 21209348  T
Q  264 aaaaatactttttgacagaaaccattaacatttcttgctatattctgagtagagtttctat 324  Q
    |||| ||||||| | ||||| |||||||||  ||||| || ||| ||| ||||||||||||    
T  21209347 aaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctat 21209287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 164 - 324
Target Start/End: Complemental strand, 14888166 - 14888006
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||| ||||||| || |||||||||| ||||||| |||  ||||||| ||| |||||||||||||| |||||  | ||||||||  | || ||||    
T  14888166 ttttcttgtgcaagaactccacaacaaaatggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttg 14888067  T
Q  264 aaaaatactttttgacagaaaccattaacatttcttgctatattctgagtagagtttctat 324  Q
    || | ||||||| | ||||| |||||||||  ||||| || ||| ||| ||||||||||||    
T  14888066 aagattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctat 14888006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 167 - 306
Target Start/End: Complemental strand, 45495748 - 45495609
Alignment:
Q  167 tcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttgaaa 266  Q
    |||||||| |||||||||||||| ||||  |||||  ||| |||||||| |||| | ||||||||||| |||||| ||||||||||  | ||||| ||||    
T  45495748 tcctgtcctagaacacctcaacagaatggtgttgtagaaaggaaaaatagaacactacaagaaatggcaagaactattttaaatgaatcaaacgtagaaa 45495649  T
Q  267 aatactttttgacagaaaccattaacatttcttgctatat 306  Q
    |||| |||| | ||||| |||| || |  |||||||||||    
T  45495648 aatatttttgggcagaagccataaatacctcttgctatat 45495609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 164 - 293
Target Start/End: Original strand, 22834602 - 22834731
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||| ||||||| || |||||||||| ||||||| ||| |||||||| ||| ||||||||||||||||||||  | ||||||||  | ||||||     
T  22834602 ttttcttgtgcaagaactccacaacaaaatggagttgttgaaaggaaaaatagaaccttgcaagaaatggctagaacaatgttaaatgaatcaaacgtta 22834701  T
Q  264 aaaaatactttttgacagaaaccattaaca 293  Q
    || | || |||| | ||||| |||||||||    
T  22834702 aagattatttttgggcagaagccattaaca 22834731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 275
Target Start/End: Original strand, 20747882 - 20747993
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||| ||||||| || |||||||||| ||||||| |||  ||||||| |||| | ||||||||||| |||||  | ||||||||  | || || |    
T  20747882 ttttcatgtgcaagaactccacaacaaaatggagttgttgaaagaaaaaatagaacactccaagaaatggcaagaacaatgttaaatgaatcaaatgtag 20747981  T
Q  264 aaaaatactttt 275  Q
    ||||||||||||    
T  20747982 aaaaatactttt 20747993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 164 - 324
Target Start/End: Original strand, 16901810 - 16901970
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||| ||||||| || |||||||||| ||||||| |||  ||||||| ||| |||||||||||||| |||||  | ||||||||  | || ||||    
T  16901810 ttttcttgtgcaagaactccacaacaaaatggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttg 16901909  T
Q  264 aaaaatactttttgacagaaaccattaacatttcttgctatattctgagtagagtttctat 324  Q
    |||| ||||||| | ||||| |||||||||  ||||| || ||| ||| ||||||||||||    
T  16901910 aaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctat 16901970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 164 - 324
Target Start/End: Original strand, 18163929 - 18164089
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||| ||||||| || |||||||||| ||||||| |||  ||||||| ||| |||||||||||||| |||||  | ||||||||  | || ||||    
T  18163929 ttttcttgtgcaagaactccacaacaaaatggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttg 18164028  T
Q  264 aaaaatactttttgacagaaaccattaacatttcttgctatattctgagtagagtttctat 324  Q
    |||| ||||||| | ||||| |||||||||  ||||| || ||| ||| ||||||||||||    
T  18164029 aaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctat 18164089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 164 - 324
Target Start/End: Complemental strand, 24928642 - 24928482
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||| ||||||| || |||||||||| ||||||| |||  ||||||| ||| |||||||||||||| |||||  | ||||||||  | || ||||    
T  24928642 ttttcttgtgcaagaactccacaacaaaatggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttg 24928543  T
Q  264 aaaaatactttttgacagaaaccattaacatttcttgctatattctgagtagagtttctat 324  Q
    |||| ||||||| | ||||| |||||||||  ||||| || ||| ||| ||||||||||||    
T  24928542 aaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctat 24928482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 164 - 324
Target Start/End: Original strand, 31360683 - 31360843
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||| ||||||| || |||||||||| ||||||| |||  ||||||| ||| |||||||||||||| |||||  | ||||||||  | || ||||    
T  31360683 ttttcttgtgcaagaactccacaacaaaatggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttg 31360782  T
Q  264 aaaaatactttttgacagaaaccattaacatttcttgctatattctgagtagagtttctat 324  Q
    |||| ||||||| | ||||| |||||||||  ||||| || ||| ||| ||||||||||||    
T  31360783 aaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctat 31360843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 164 - 252
Target Start/End: Original strand, 8998309 - 8998397
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatga 252  Q
    ||||||||||| ||||| ||||||||||||| ||||||| |||  |||||||  || |||||||||||||| |||||| ||||||||||    
T  8998309 ttttcctgtcctagaactcctcaacaaaatggagttgttgaaagaaaaaataggactttgcaagaaatggcaagaactattttaaatga 8998397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 170 - 321
Target Start/End: Original strand, 9007484 - 9007635
Alignment:
Q  170 tgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttgaaaaat 269  Q
    ||||| ||||| ||||||||||||| ||||||| |||  ||||||| ||| |||||||||||||| |||||| ||||||||||  | || ||||| ||||    
T  9007484 tgtcctagaactcctcaacaaaatggagttgttgaaagaaaaaatagaactttgcaagaaatggcaagaactattttaaatgaatcaaatgttgagaaat 9007583  T
Q  270 actttttgacagaaaccattaacatttcttgctatattctgagtagagtttc 321  Q
    | |||| | ||||| |||| || |  |||||||| ||| | | |||||||||    
T  9007584 atttttgggcagaagccataaatacatcttgctacattttaaatagagtttc 9007635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 164 - 288
Target Start/End: Complemental strand, 27747527 - 27747403
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||||| |||||||||||||||||||  |||||  |||  |||||||  ||||| ||||||||||| |||||| | ||||||||| | || ||||    
T  27747527 ttttcttgtcctagaacacctcaacaaaatggtgttgtagaaagaaaaaataggacattacaagaaatggcaagaactatcttaaatgagtcaaatgttg 27747428  T
Q  264 aaaaatactttttgacagaaaccat 288  Q
    ||||||| |||| | ||||| ||||    
T  27747427 aaaaatatttttgggcagaagccat 27747403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 154 - 252
Target Start/End: Original strand, 11377249 - 11377347
Alignment:
Q  154 tctcttataattttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatga 252  Q
    ||||| ||||||||| ||||| ||||| |||||||||||||  |||||  |||  |||||||  ||||| ||||||||||| |||||| ||||||||||    
T  11377249 tctctcataattttcttgtcctagaacgcctcaacaaaatggtgttgtagaaagaaaaaataggacattacaagaaatggcaagaactattttaaatga 11377347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 240
Target Start/End: Original strand, 29563207 - 29563272
Alignment:
Q  175 aagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaac 240  Q
    |||||| || |||||||||| ||||||| ||| |||||||| ||| |||||||||||||| |||||    
T  29563207 aagaactccacaacaaaatggagttgttgaaaggaaaaatagaaccttgcaagaaatggcaagaac 29563272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 164 - 324
Target Start/End: Original strand, 6696082 - 6696242
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||| ||||||| || |||||||||| ||||||| |||  ||||||| ||| |||||||||||||| |||||  | ||||||||  | || ||||    
T  6696082 ttttcttgtgcaagaactccacaacaaaatggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttg 6696181  T
Q  264 aaaaatactttttgacagaaaccattaacatttcttgctatattctgagtagagtttctat 324  Q
    |||| ||||||| | ||||| |||||||||  ||||| || ||| ||| ||||||||||||    
T  6696182 aaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctat 6696242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 164 - 252
Target Start/End: Original strand, 115611 - 115699
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatga 252  Q
    ||||||||||| ||||| ||||||||||||| ||||||| |||  |||||||  || |||||||||||||| |||||| ||||||||||    
T  115611 ttttcctgtcctagaactcctcaacaaaatggagttgttgaaagaaaaaataggactttgcaagaaatggcaagaactattttaaatga 115699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 164 - 324
Target Start/End: Original strand, 16268920 - 16269080
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||| ||||||| || |||||||||| ||||||| |||  ||||| | ||| |||||||||||||| |||||  | ||||||||  | || ||||    
T  16268920 ttttcttgtgcaagaactccacaacaaaatggagttgttgaaagaaaaaacagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttg 16269019  T
Q  264 aaaaatactttttgacagaaaccattaacatttcttgctatattctgagtagagtttctat 324  Q
    || | ||||||| | ||||| |||||||||  ||||| || ||| ||| ||||||||||||    
T  16269020 aagattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctat 16269080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 252
Target Start/End: Original strand, 14935764 - 14935849
Alignment:
Q  167 tcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatga 252  Q
    |||||||| |||||||||||||| ||||  |||||  ||| |||||||| |||| | ||||||||||| |||||| ||||||||||    
T  14935764 tcctgtcctagaacacctcaacagaatggtgttgtagaaaggaaaaatagaacactacaagaaatggcaagaactattttaaatga 14935849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 321
Target Start/End: Original strand, 17155280 - 17155437
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||| ||| ||| || |||||||||| ||||||| |||  ||||||| ||| |||||||||||||| |||||  | ||||||||  | || ||||    
T  17155280 ttttcttgtgcaacaactccacaacaaaatggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttg 17155379  T
Q  264 aaaaatactttttgacagaaaccattaacatttcttgctatattctgagtagagtttc 321  Q
    || | ||||||| | ||||| |||||||||  ||||| || ||| ||| |||||||||    
T  17155380 aagattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttc 17155437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 306
Target Start/End: Complemental strand, 54696301 - 54696159
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||| ||||||| || |||||||||| ||||||| |||  ||||||| |||| | ||||||||||| |||||  | ||||||||  | || || |    
T  54696301 ttttcatgtgcaagaactccacaacaaaatggagttgttgaaagaaaaaatagaacactccaagaaatggcaagaacaatgttaaatgaatcaaatgtag 54696202  T
Q  264 aaaaatactttttgacagaaaccattaacatttcttgctatat 306  Q
    |||||||||||| | | ||| |||| || | ||||||||||||    
T  54696201 aaaaatacttttgggctgaagccataaatacttcttgctatat 54696159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 306
Target Start/End: Original strand, 26815762 - 26815894
Alignment:
Q  174 caagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttgaaaaatactt 273  Q
    ||||||| || |||||||||| ||||||| |||  ||||||| |||| | ||||||||||| |||||  | ||||||||  | || || |||||||||||    
T  26815762 caagaactccacaacaaaatggagttgttgaaagaaaaaatagaacactccaagaaatggcaagaacaatgttaaatgaatcaaatgtagaaaaatactt 26815861  T
Q  274 tttgacagaaaccattaacatttcttgctatat 306  Q
    || | | ||| |||| || | ||||||||||||    
T  26815862 ttgggctgaagccataaatacttcttgctatat 26815894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 164 - 324
Target Start/End: Original strand, 16158747 - 16158907
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||| ||||||| || |||||||||| ||||||| |||  ||||||| ||| |||||||||||||| |||||  | ||||||||  | || ||||    
T  16158747 ttttcttgtgcaagaactccacaacaaaatggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttg 16158846  T
Q  264 aaaaatactttttgacagaaaccattaacatttcttgctatattctgagtagagtttctat 324  Q
    |||| ||||||| | ||||| |||||||||  ||||| || ||| ||| ||||||||||||    
T  16158847 aaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctat 16158907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 164 - 306
Target Start/End: Original strand, 166741 - 166882
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||||| |||||||||||||||||||  |||||  |||| |||||||  ||||| ||||||||||| |||||| ||||||||||  | || ||||    
T  166741 ttttcttgtcctagaacacctcaacaaaatggtgttgtagaaaa-aaaaataagacattacaagaaatggcaagaactattttaaatgaatcaaatgttg 166839  T
Q  264 aaaaatactttttgacagaaaccattaacatttcttgctatat 306  Q
    |||| || |||| | |||||||||| || | ||||||||||||    
T  166840 aaaagtatttttgggcagaaaccataaatacttcttgctatat 166882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 164 - 252
Target Start/End: Original strand, 52478 - 52566
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatga 252  Q
    ||||||||||| ||||| ||||||||||||| ||||||| |||  |||||||  || |||||||||||||| |||||| ||||||||||    
T  52478 ttttcctgtcctagaactcctcaacaaaatggagttgttgaaagaaaaaataggactttgcaagaaatggcaagaactattttaaatga 52566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 174 - 324
Target Start/End: Original strand, 148887 - 149037
Alignment:
Q  174 caagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttgaaaaatactt 273  Q
    ||||||| || |||||||||  |||||||||||  ||||||| ||| || |||||||||||||||||  | ||||||||  | || |||||||| || ||    
T  148887 caagaactccacaacaaaatagagttgttaaaagaaaaaatagaactttacaagaaatggctagaaccatgttaaatgaatcaaatgttgaaaattattt 148986  T
Q  274 tttgacagaaaccattaacatttcttgctatattctgagtagagtttctat 324  Q
    || | ||||| |||||||||  |||||||| ||| ||| || |||||||||    
T  148987 ttgggcagaagccattaacacatcttgctacattttgaataaagtttctat 149037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0611 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0611
Description:

Target: scaffold0611; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 164 - 324
Target Start/End: Original strand, 1813 - 1973
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||| ||||||| || |||||||||| ||||||| |||  ||||| | ||| |||||||||||||| |||||  | ||||||||  | || ||||    
T  1813 ttttcttgtgcaagaactccacaacaaaatggagttgttgaaagaaaaaacagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttg 1912  T
Q  264 aaaaatactttttgacagaaaccattaacatttcttgctatattctgagtagagtttctat 324  Q
    || | ||||||| | ||||| |||||||||  ||||| || ||| ||| ||||||||||||    
T  1913 aagattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctat 1973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 164 - 252
Target Start/End: Original strand, 85284 - 85372
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatga 252  Q
    ||||| ||||| ||||| ||||||||||||| ||||||| |||  |||||||  || |||||||||||||| |||||| ||||||||||    
T  85284 ttttcttgtcctagaactcctcaacaaaatggagttgttgaaagaaaaaataggactttgcaagaaatggcaagaactattttaaatga 85372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 306
Target Start/End: Complemental strand, 100815 - 100673
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||| ||||||| || |||||||||| ||||||| |||  ||||||| |||| | ||||||||||| |||||  | ||||||||  | || || |    
T  100815 ttttcatgtgcaagaactccacaacaaaatggagttgttgaaagaaaaaatagaacactccaagaaatggcaagaacaatgttaaatgaatcaaatgtag 100716  T
Q  264 aaaaatactttttgacagaaaccattaacatttcttgctatat 306  Q
    |||||||||||| | | ||| |||| || | ||||||||||||    
T  100715 aaaaatacttttgggctgaagccataaatacttcttgctatat 100673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 164 - 275
Target Start/End: Original strand, 18451 - 18562
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||||| |||||||||||||||||||  |||||  |||  |||||||  |||||  |||||||||| |||||| ||||||||||| | || ||||    
T  18451 ttttcttgtcctagaacacctcaacaaaatggtgttgtagaaagaaaaaataggacattataagaaatggcaagaactattttaaatgagtcaaatgttg 18550  T
Q  264 aaaaatactttt 275  Q
    ||||||| ||||    
T  18551 aaaaatattttt 18562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 321
Target Start/End: Complemental strand, 85062 - 84908
Alignment:
Q  167 tcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttgaaa 266  Q
    |||||| ||||||| || |||||||||| ||||||| |||  ||||||| ||| |||||||||||||| |||||  | ||||||||  | || || |||     
T  85062 tcctgtgcaagaactccacaacaaaatggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgtagaag 84963  T
Q  267 aatactttttgacagaaaccattaacatttcttgctatattctgagtagagtttc 321  Q
    | || |||| | ||||| |||||||||  ||||| || ||| ||| |||||||||    
T  84962 attatttttgggcagaagccattaacacatcttgttacattttgaatagagtttc 84908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 164 - 390
Target Start/End: Original strand, 260332 - 260557
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||| ||||||| ||||||||||||| ||||||| |||  ||||||  |||  | ||||||||||| |||||  |  | |||||  | |||||||    
T  260332 ttttcatgtgcaagaactcctcaacaaaatggagttgttgaaagaaaaaatcgaactctacaagaaatggcaagaacaatgattaatgaatcaaacgttg 260431  T
Q  264 aaaaatactttttgacagaaaccattaacatttcttgctatattctgagtagagtttctattaaaaagaatttttaacaaaacttcaatcgaactatgga 363  Q
    ||||||| |||| | | ||| |||| ||||| |||||||||||  | | ||||||||| |||| ||| |||| | ||||||||  ||   ||||| ||||    
T  260432 aaaaatatttttgggctgaagccatcaacatatcttgctatatcataaatagagtttcaattagaaa-aattctcaacaaaaccccatatgaactctgga 260530  T
Q  364 aaaatagaaaatcaaatatttcttatt 390  Q
    |||| |||||| |||| ||||||||||    
T  260531 aaaacagaaaaccaaacatttcttatt 260557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0500 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 252
Target Start/End: Original strand, 9406 - 9494
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatga 252  Q
    ||||| ||||| |||||  || ||||||||| ||||||| |||  ||||||| ||| |||||||||||||| |||||| ||||||||||    
T  9406 ttttcttgtcctagaacttctgaacaaaatggagttgttgaaagaaaaaatagaactttgcaagaaatggcaagaactattttaaatga 9494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0313
Description:

Target: scaffold0313; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 174 - 321
Target Start/End: Original strand, 13431 - 13578
Alignment:
Q  174 caagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttgaaaaatactt 273  Q
    ||||||| || |||||||||| ||||||| |||  ||||||| ||| || |||||||||||||||||  | ||||||||  | || |||||| | || ||    
T  13431 caagaactccacaacaaaatggagttgttgaaagaaaaaatagaactttacaagaaatggctagaaccatgttaaatgaatcaaatgttgaagattattt 13530  T
Q  274 tttgacagaaaccattaacatttcttgctatattctgagtagagtttc 321  Q
    || | ||||| |||||||||  ||||| || ||| ||| |||||||||    
T  13531 ttgggcagaagccattaacacatcttgttacattttgaatagagtttc 13578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 324
Target Start/End: Complemental strand, 62794 - 62691
Alignment:
Q  221 ttgcaagaaatggctagaactcttttaaatgaggccaacgttgaaaaatactttttgacagaaaccattaacatttcttgctatattctgagtagagttt 320  Q
    ||||||||||||||||||||  | ||||||||  | || |||||||| ||||||| | ||||| |||||||||  ||||| || ||| ||| ||||||||    
T  62794 ttgcaagaaatggctagaacaatgttaaatgaatcaaatgttgaaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagttt 62695  T
Q  321 ctat 324  Q
    ||||    
T  62694 ctat 62691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 321
Target Start/End: Original strand, 29750 - 29904
Alignment:
Q  167 tcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttgaaa 266  Q
    |||||| ||||||| || |||||||||| ||||||| |||  |||||||  || ||||||||||||||||||||  | ||||||||  | || || |||     
T  29750 tcctgtgcaagaactccacaacaaaatggagttgttgaaagaaaaaataggactttgcaagaaatggctagaacaatgttaaatgaatcaaatgtagaag 29849  T
Q  267 aatactttttgacagaaaccattaacatttcttgctatattctgagtagagtttc 321  Q
    | || |||| | ||||| |||||||||  ||||| || ||| ||| |||||||||    
T  29850 attatttttgggcagaagccattaacacatcttgttacattttgaatagagtttc 29904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 33382 - 33309
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctag 237  Q
    ||||| ||| ||||||| ||||||||||||||||||||| ||  |||||||| ||| |||| ||||||| ||||    
T  33382 ttttcatgtgcaagaactcctcaacaaaatgaagttgttgaatggaaaaatagaaccttgcgagaaatgtctag 33309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 311
Target Start/End: Original strand, 19363 - 19510
Alignment:
Q  164 ttttcctgtccaagaacacctcaacaaaatgaagttgttaaaaagaaaaatataacattgcaagaaatggctagaactcttttaaatgaggccaacgttg 263  Q
    ||||| ||||| ||||| |||||||||||||  || ||| |||  ||||||| ||| || ||||||||||| |||||  | ||||||||  | || ||||    
T  19363 ttttcttgtcccagaactcctcaacaaaatggtgtagttgaaagaaaaaatagaactttacaagaaatggccagaaccatgttaaatgaatcaaatgttg 19462  T
Q  264 aaaaatactttttgacagaaaccattaacatttcttgctatattctga 311  Q
    ||||||| |||| | | ||| | |||||||  ||||||||||| ||||    
T  19463 aaaaatatttttgggctgaagcaattaacacatcttgctatatcctga 19510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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