View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0810_low_22 (Length: 392)

Name: NF0810_low_22
Description: NF0810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0810_low_22
NF0810_low_22
[»] chr7 (7 HSPs)
chr7 (18-311)||(5892650-5892941)
chr7 (209-379)||(36934517-36934685)
chr7 (21-186)||(26199849-26200017)
chr7 (19-149)||(15121370-15121500)
chr7 (41-153)||(36934317-36934429)
chr7 (307-380)||(5888858-5888931)
chr7 (19-131)||(47589097-47589209)
[»] chr4 (10 HSPs)
chr4 (19-186)||(12888308-12888476)
chr4 (19-150)||(14792299-14792430)
chr4 (200-380)||(12888514-12888691)
chr4 (19-167)||(18431502-18431649)
chr4 (19-150)||(51407194-51407325)
chr4 (21-150)||(50589647-50589776)
chr4 (19-134)||(18357158-18357272)
chr4 (26-106)||(3926373-3926452)
chr4 (230-305)||(46879475-46879551)
chr4 (28-103)||(3915355-3915429)
[»] chr6 (5 HSPs)
chr6 (19-187)||(22696609-22696777)
chr6 (26-186)||(34502840-34503000)
chr6 (190-380)||(22696804-22696987)
chr6 (269-380)||(34501316-34501419)
chr6 (190-266)||(34502714-34502788)
[»] chr8 (5 HSPs)
chr8 (19-369)||(20519080-20519434)
chr8 (19-162)||(38149372-38149515)
chr8 (33-186)||(32919347-32919501)
chr8 (188-358)||(38149163-38149327)
chr8 (186-372)||(32919144-32919323)
[»] chr1 (5 HSPs)
chr1 (19-179)||(32946770-32946931)
chr1 (186-310)||(32946617-32946739)
chr1 (85-150)||(36057714-36057779)
chr1 (85-150)||(36058842-36058907)
chr1 (99-151)||(27109901-27109953)
[»] chr2 (3 HSPs)
chr2 (19-186)||(36592967-36593134)
chr2 (19-150)||(5051451-5051582)
chr2 (228-372)||(36593197-36593337)
[»] chr3 (7 HSPs)
chr3 (19-169)||(25498904-25499054)
chr3 (26-150)||(51056693-51056817)
chr3 (189-374)||(49358815-49358996)
chr3 (19-126)||(49358642-49358743)
chr3 (136-186)||(49358738-49358788)
chr3 (19-76)||(38258888-38258945)
chr3 (19-52)||(17113683-17113716)
[»] chr5 (7 HSPs)
chr5 (19-186)||(27632047-27632214)
chr5 (19-186)||(36607723-36607890)
chr5 (19-150)||(33758231-33758362)
chr5 (19-149)||(9436482-9436612)
chr5 (271-375)||(27631874-27631977)
chr5 (188-291)||(36607593-36607697)
chr5 (205-256)||(27631963-27632014)
[»] scaffold0005 (1 HSPs)
scaffold0005 (19-150)||(47301-47432)


Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 311
Target Start/End: Complemental strand, 5892941 - 5892650
Alignment:
Q  18 gacatcatcacctcacaccaccatcacctcctccacatagatctgaatcggaaggaaacgaccaccgcacacaaacaccagacaacctgtgtttttctaa 117  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||| ||||||||||||||||||||||||||||    
T  5892941 gacatcaccgcctcacaccaccatcacctcctccacatagatctgaatcggaaggaaa--accaccacacaaaaacaccagacaacctgtgtttttctaa 5892844  T
Q  118 cagccgcaaactcagcatccgcaaggaagaaaatcaaaaaacccccaacacaacataacccacaagctcacgaactcacgaccacaaaagaaagagacag 217  Q
     ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  5892843 tagccgcaaactcagcatccgcaaggaagaaaatcacaaaacccccaacacaacataacccacaagctcacgaactcacaaccacacaagaaagagacag 5892744  T
Q  218 tgaagatttagcctcccaactcaacaccaaacaccaccacttgtgatacctatcaccaacaaacaccaaaatcaccagcaactcaatacaccac 311  Q
    |||| |||| ||||||||||| |||||||||||||||||||||||||||| ||||| ||| |||||||||||||||| ||||||||||||||||    
T  5892743 tgaacatttcgcctcccaacttaacaccaaacaccaccacttgtgatacccatcactaacgaacaccaaaatcaccatcaactcaatacaccac 5892650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 209 - 379
Target Start/End: Original strand, 36934517 - 36934685
Alignment:
Q  209 aagagacagtgaagatttagcctcccaactcaacaccaaacaccaccacttgtgatacctatcaccaacaaacaccaaaatcaccagcaactcaatacac 308  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||| |||  ||||| ||    
T  36934517 aagagacagtgaatatttcgcctcccaactcaacaccaaacaccaccacttgtgatacccatcaccaacaaccaccaaaattaccatcaa--caataaac 36934614  T
Q  309 cacggccttagatctgaagatcaccacatgcagactacaccaccaccacttggacatcacccaagatagca 379  Q
    || | |||| ||||||||||||||||||  ||| || || |||||||||||||||||||||||||||||||    
T  36934615 catgaccttcgatctgaagatcaccacactcaggctgcatcaccaccacttggacatcacccaagatagca 36934685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 21 - 186
Target Start/End: Original strand, 26199849 - 26200017
Alignment:
Q  21 atcatcacctcacaccaccatcacctcctccacatagatctgaatcggaaggaaacgaccaccgcacacaaacaccagacaac---ctgtgtttttctaa 117  Q
    |||| |||||||||| |||||||||| ||| ||||||||||| ||||||||||||| |||||| |||| ||||||||||||||   ||||||||||||||    
T  26199849 atcaccacctcacacaaccatcaccttctctacatagatctggatcggaaggaaacaaccaccacacaaaaacaccagacaaccaactgtgtttttctaa 26199948  T
Q  118 cagccgcaaactcagcatccgcaaggaagaaaatcaaaaaacccccaacacaacataacccacaagctc 186  Q
    ||||||||||||||||| | | |||||||||||||| |  ||||||| || |||  |||||||||||||    
T  26199949 cagccgcaaactcagcaccaggaaggaagaaaatcacattacccccatcataactcaacccacaagctc 26200017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 15121500 - 15121370
Alignment:
Q  19 acatcatcacctcacaccaccatcacctcctccacatagatctgaatcggaaggaaacgaccaccgcacacaaacaccagacaacctgtgtttttctaac 118  Q
    |||||| ||||||||||| |||||| |||||||| ||||||||| |||||||||||||  ||||| |||| || ||||||||||||| |||||||||||     
T  15121500 acatcaccacctcacacccccatcaactcctccatatagatctggatcggaaggaaacatccaccacacaaaagcaccagacaacctatgtttttctaag 15121401  T
Q  119 agccgcaaactcagcatccgcaaggaagaaa 149  Q
    |||||||||||||||| ||||||||||||||    
T  15121400 agccgcaaactcagcacccgcaaggaagaaa 15121370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 41 - 153
Target Start/End: Original strand, 36934317 - 36934429
Alignment:
Q  41 tcacctcctccacatagatctgaatcggaaggaaacgaccaccgcacacaaacaccagacaacctgtgtttttctaacagccgcaaactcagcatccgca 140  Q
    ||||||||||||||||||||| ||||||||||||||  ||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||     
T  36934317 tcacctcctccacatagatcttaatcggaaggaaacatccaccacacaaaaacaccagacaaactgtgtttttctaacagccgcaaactcagcacccgct 36934416  T
Q  141 aggaagaaaatca 153  Q
    |||| ||||||||    
T  36934417 aggacgaaaatca 36934429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 307 - 380
Target Start/End: Complemental strand, 5888931 - 5888858
Alignment:
Q  307 accacggccttagatctgaagatcaccacatgcagactacaccaccaccacttggacatcacccaagatagcaa 380  Q
    |||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5888931 accacgaccttagatatgaagatcaccacatgcagactacatcaccaccacttggacatcacccaagatagcaa 5888858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 47589097 - 47589209
Alignment:
Q  19 acatcatcacctcacaccaccatcacctcctccacatagatctgaatcggaaggaaacgaccaccgcacacaaacaccagacaacctgtgtttttctaac 118  Q
    |||||| ||||||||||||| |||| ||| |||||||||| ||| ||| |||||||||| ||||| |||| |||||||| |||||||||||||||||||     
T  47589097 acatcaccacctcacaccactatcatctcatccacatagacctggatcagaaggaaacgtccaccacacaaaaacaccaaacaacctgtgtttttctaaa 47589196  T
Q  119 agccgcaaactca 131  Q
    || ||||||||||    
T  47589197 agtcgcaaactca 47589209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 7e-62; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 12888308 - 12888476
Alignment:
Q  19 acatcatcacctcacaccaccatcacctcctccacatagatctgaatcggaaggaaacgaccaccgcacacaaacaccagacaacctgtgtttttctaac 118  Q
    |||||| ||| ||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||| ||||||||||||||||||||||| |||||    
T  12888308 acatcaccacatcacaccaccatcacctcctccacatagatctggatcagaaggaaacaaccaccgcacaaaaacaccagacaacctgtgttttactaac 12888407  T
Q  119 agccgcaaactcagcatccgcaaggaagaaaatc-aaaaaacccccaacacaacataacccacaagctc 186  Q
    |||||||||||||||| |||||||||||||||||  ||||||||||||||||||| |||||||||||||    
T  12888408 agccgcaaactcagcacccgcaaggaagaaaatcgcaaaaacccccaacacaacacaacccacaagctc 12888476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 14792299 - 14792430
Alignment:
Q  19 acatcatcacctcacaccaccatcacctcctccacatagatctgaatcggaaggaaacgaccaccgcacacaaacaccagacaacctgtgtttttctaac 118  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||| |||  |  |||||| |||||||||||||||||||    
T  14792299 acatcaccacctcacaccaccatcacctcctccacatagatctggatcagaaggaaacaaccaccacacgaattcaccaggcaacctgtgtttttctaac 14792398  T
Q  119 agccgcaaactcagcatccgcaaggaagaaaa 150  Q
    || ||||||||||||| |||||||||||||||    
T  14792399 agtcgcaaactcagcacccgcaaggaagaaaa 14792430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 200 - 380
Target Start/End: Original strand, 12888514 - 12888691
Alignment:
Q  200 cacaaaagaaagagacagtgaagatttagcctcccaactcaacaccaaacaccaccacttgtgatacctatcaccaacaaacaccaaaatcaccagcaac 299  Q
    |||| |||||||||||||| ||   || ||||||||||||||||||||  |||||||| ||||||||| ||||||||||| ||||||||| |||| ||||    
T  12888514 cacacaagaaagagacagtaaac--ttcgcctcccaactcaacaccaacaaccaccacctgtgatacccatcaccaacaaccaccaaaattaccatcaac 12888611  T
Q  300 tcaatacaccacggccttagatctgaagatcaccacatgcagactacaccaccaccacttggacatcacccaagatagcaa 380  Q
    |||||| |||| | |||||||| || ||||||||||| ||||||| || ||||||||||||||||||||| |||| |||||    
T  12888612 tcaataaaccatgaccttagatttg-agatcaccacacgcagactgcatcaccaccacttggacatcacctaagacagcaa 12888691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 18431649 - 18431502
Alignment:
Q  19 acatcatcacctcacaccaccatcacctcctccacatagatctgaatcggaaggaaacgaccaccgcacacaaacaccagacaacctgtgtttttctaac 118  Q
    |||||| |||||||||||||||||| ||||||| ||||||| || ||||||||||||  |||| | |||| |||||||||||||||||| |||| |||||    
T  18431649 acatcaccacctcacaccaccatcatctcctccgcatagatttggatcggaaggaaaa-accatcacacaaaaacaccagacaacctgtattttcctaac 18431551  T
Q  119 agccgcaaactcagcatccgcaaggaagaaaatcaaaaaacccccaaca 167  Q
    ||| |||||||||||| | ||||  |||||||||| |||||||||||||    
T  18431550 agctgcaaactcagcacctgcaacaaagaaaatcacaaaacccccaaca 18431502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 51407325 - 51407194
Alignment:
Q  19 acatcatcacctcacaccaccatcacctcctccacatagatctgaatcggaaggaaacgaccaccgcacacaaacaccagacaacctgtgtttttctaac 118  Q
    |||||| ||| |||||||||||||||||| |||||| |||| || |||||||||||||  ||||| |||  |||||||||||||||||||||||||||||    
T  51407325 acatcaccacttcacaccaccatcacctcatccacaaagatttggatcggaaggaaacatccaccacactaaaacaccagacaacctgtgtttttctaac 51407226  T
Q  119 agccgcaaactcagcatccgcaaggaagaaaa 150  Q
    | |||||||||||||| || |||| |||||||    
T  51407225 aaccgcaaactcagcacccacaagaaagaaaa 51407194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 150
Target Start/End: Original strand, 50589647 - 50589776
Alignment:
Q  21 atcatcacctcacaccaccatcacctcctccacatagatctgaatcggaaggaaacgaccaccgcacacaaacaccagacaacctgtgtttttctaacag 120  Q
    |||| |||||||||| ||||||||||||| |||||| ||||| |||  |||||||| |||||| |||| |||||||| ||||| ||||| ||||||||||    
T  50589647 atcaccacctcacacaaccatcacctccttcacatatatctggatcaaaaggaaacaaccaccacacataaacaccaaacaacatgtgtatttctaacag 50589746  T
Q  121 ccgcaaactcagcatccgcaaggaagaaaa 150  Q
     ||||||||||||| | ||| |||||||||    
T  50589747 tcgcaaactcagcacctgcatggaagaaaa 50589776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 18357158 - 18357272
Alignment:
Q  19 acatcatcacctcacaccaccatcacctcctccacatagatctgaatcggaaggaaacgaccaccgcacacaaacaccagacaacctgtgtttttctaac 118  Q
    |||||| |||||||||||||||||| ||||||| ||||||| || ||||||||||||  |||| | |||| |||||||||||||||||| |||| |||||    
T  18357158 acatcaccacctcacaccaccatcatctcctccgcatagatttggatcggaaggaaa-aaccatcacacaaaaacaccagacaacctgtattttcctaac 18357256  T
Q  119 agccgcaaactcagca 134  Q
    ||| ||||||||||||    
T  18357257 agctgcaaactcagca 18357272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 26 - 106
Target Start/End: Original strand, 3926373 - 3926452
Alignment:
Q  26 cacctcacaccaccatcacctcctccacatagatctgaatcggaaggaaacgaccaccgcacacaaacaccagacaacctg 106  Q
    ||||||||||||||| |||||| |||||||||||||| | ||||| ||||  |||||| |||| |||||||| ||||||||    
T  3926373 cacctcacaccaccaacacctcatccacatagatctggagcggaa-gaaataaccaccacacaaaaacaccaaacaacctg 3926452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 305
Target Start/End: Complemental strand, 46879551 - 46879475
Alignment:
Q  230 ctcccaactcaacaccaaacaccacca-cttgtgatacctatcaccaacaaacaccaaaatcaccagcaactcaata 305  Q
    ||||||||||||||||||  ||||||| |||| |||||| ||||| ||||| ||| ||||||||||  |||||||||    
T  46879551 ctcccaactcaacaccaacaaccaccatcttgagatacccatcacaaacaatcactaaaatcaccattaactcaata 46879475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 3915355 - 3915429
Alignment:
Q  28 cctcacaccaccatcacctcctccacatagatctgaatcggaaggaaacgaccaccgcacacaaacaccagacaac 103  Q
    ||||||||||||| |||||| |||||||||||||| | ||||| ||||  |||||| |||| |||||||| |||||    
T  3915355 cctcacaccaccaacacctcatccacatagatctggagcggaa-gaaataaccaccacacaaaaacaccaaacaac 3915429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 22696609 - 22696777
Alignment:
Q  19 acatcatcacctcacaccaccatcacctcctccacatagatctgaatcggaaggaaacgaccaccgcacacaaacaccagacaacctgtgtttttctaac 118  Q
    |||||| |||||  |||||||||||||||||||||||||||||| ||||||||||||| |||||| |||| |||||||||| ||||||||||||||||||    
T  22696609 acatcaccaccttgcaccaccatcacctcctccacatagatctggatcggaaggaaacaaccaccacacataaacaccagataacctgtgtttttctaac 22696708  T
Q  119 agccgcaaactcagcatccgcaaggaagaaaatcaaaaaacccccaacacaacataacccacaagctca 187  Q
    |||||||||||||||| |||||||||||||||||| ||||| ||||||| |||| ||||||||||||||    
T  22696709 agccgcaaactcagcacccgcaaggaagaaaatcacaaaactcccaacagaacacaacccacaagctca 22696777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 26 - 186
Target Start/End: Complemental strand, 34503000 - 34502840
Alignment:
Q  26 cacctcacaccaccatcacctcctccacatagatctgaatcggaaggaaacgaccaccgcacacaaacaccagacaacctgtgtttttctaacagccgca 125  Q
    ||||||||||||| |||||||||||||  |||||||| || |||||||||| || ||| |||| ||||| ||||||||||||||||| |||||| |||||    
T  34503000 cacctcacaccacgatcacctcctccatgtagatctggattggaaggaaacaacgaccacacaaaaacaacagacaacctgtgttttactaacaaccgca 34502901  T
Q  126 aactcagcatccgcaaggaagaaaatcaaaaaacccccaacacaacataacccacaagctc 186  Q
    ||||||||| |||||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  34502900 aactcagcacccgcaaggaagaaaatcacaaaatccccaacacaacacaacccacaagctc 34502840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 190 - 380
Target Start/End: Original strand, 22696804 - 22696987
Alignment:
Q  190 aactcacgaccacaaaagaaagagacagtgaagatttagcctcccaactcaacaccaaacaccaccacttgtgatacctatcaccaacaaacaccaaaat 289  Q
    ||||||| |||||| ||||||||||||||||| |||| |||||||| || ||||||||  |||||||||||||||||| ||||||||||| |      ||    
T  22696804 aactcaccaccacacaagaaagagacagtgaacatttcgcctcccagctaaacaccaacaaccaccacttgtgataccgatcaccaacaacc------at 22696897  T
Q  290 caccagcaactcaatacaccacggccttagatctgaagatcaccacatgcagactacaccaccaccacttggacatcacccaagatagcaa 380  Q
    ||||| ||||||||||  ||| | ||||||||||| ||||||||||| | ||||| || |||| ||||||||||||||||||||| |||||    
T  22696898 caccatcaactcaataatccatgaccttagatctg-agatcaccacacgtagactgcatcaccgccacttggacatcacccaagacagcaa 22696987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 380
Target Start/End: Complemental strand, 34501419 - 34501316
Alignment:
Q  269 atcaccaacaaacaccaaaatcaccagcaactcaatacaccacggccttagatctgaagatcaccacatgcagactacaccaccaccacttggacatcac 368  Q
    ||||||||||| ||| |||||||||| |||||||||| |||| | ||||| |||        |||||| ||||||| || ||| ||||||||||||||||    
T  34501419 atcaccaacaaccactaaaatcaccatcaactcaatataccatgaccttatatc--------accacacgcagactgcatcactaccacttggacatcac 34501328  T
Q  369 ccaagatagcaa 380  Q
    |||||| |||||    
T  34501327 ccaagacagcaa 34501316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 190 - 266
Target Start/End: Complemental strand, 34502788 - 34502714
Alignment:
Q  190 aactcacgaccacaaaagaaagagacagtgaagatttagcctcccaactcaacaccaaacaccaccacttgtgatac 266  Q
    ||||||| |||||| |||||||||||||| ||   || |||||||||||||||| |||  |||||||||||||||||    
T  34502788 aactcaccaccacagaagaaagagacagtaaac--ttcgcctcccaactcaacagcaacaaccaccacttgtgatac 34502714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 113; Significance: 4e-57; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 19 - 369
Target Start/End: Original strand, 20519080 - 20519434
Alignment:
Q  19 acatcatcacctcacaccaccatcacctcctccacatagatctgaatcggaaggaaacgaccaccgcacacaaacaccagacaacctgtgtttttctaac 118  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||| |||| ||||||||| ||||||||||||||    
T  20519080 acatcaccacctcacaccaccatcacctcctccacatagatctggatcggaaggaaacaaccaccacacaaaaactccagacaacttgtgtttttctaac 20519179  T
Q  119 agccgcaaactcagcatccgcaaggaagaaaatcaaaaaaccccca----------acacaacataacccacaagctcacgaactcacgaccacaaaaga 208  Q
    | |||||||||||||| || ||||||||||||||| ||||||||||           | || ||| | |  ||  | | ||||||||| |||||| ||||    
T  20519180 aaccgcaaactcagcacccacaaggaagaaaatcacaaaacccccatccataagttcctcatcatcatcgccatacccccgaactcaccaccacacaaga 20519279  T
Q  209 aagagacagtgaagatttagcctcccaactcaacaccaaacaccaccacttgtgatacctatcaccaacaaacaccaaaatcaccagcaactcaatacac 308  Q
    |||||||| |  | | || |||||||||||||||||||   |||||||||| ||||||| ||||||||||| |||||||||| ||| |||| ||||  ||    
T  20519280 aagagacaat--aaacttcgcctcccaactcaacacca---accaccacttatgatacccatcaccaacaaccaccaaaatctccatcaacacaatcaac 20519374  T
Q  309 cacggccttagatctgaagatcaccacatgcagactacaccaccaccacttggacatcacc 369  Q
    || |  |||||||||| ||||||| | | |||||||  | |||||||||||||||||||||    
T  20519375 catgatcttagatctg-agatcacaaaacgcagactcaatcaccaccacttggacatcacc 20519434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 19 - 162
Target Start/End: Complemental strand, 38149515 - 38149372
Alignment:
Q  19 acatcatcacctcacaccaccatcacctcctccacatagatctgaatcggaaggaaacgaccaccgcacacaaacaccagacaacctgtgtttttctaac 118  Q
    |||||| ||| ||||||||||||||||||||||| ||||||||| ||||||||||||| |||||| |||| |||||||||||||| |||||||||| |||    
T  38149515 acatcaccacttcacaccaccatcacctcctccatatagatctggatcggaaggaaacaaccaccacacaaaaacaccagacaacatgtgtttttccaac 38149416  T
Q  119 agccgcaaactcagcatccgcaaggaagaaaatcaaaaaacccc 162  Q
    | |||||||||||||| || ||||||||| ||||| ||||||||    
T  38149415 aaccgcaaactcagcacccacaaggaagacaatcacaaaacccc 38149372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 33 - 186
Target Start/End: Complemental strand, 32919501 - 32919347
Alignment:
Q  33 caccaccatcacctcctccacatagatctgaatcggaaggaaacgaccaccgcacacaaacaccagaca-acctgtgtttttctaacagccgcaaactca 131  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||| |||| || ||||| ||| || |||||||||| |||| |||||||||||    
T  32919501 caccaccatcacctcctccacatagatctggatcggaaggaaacaaccaccacacaaaagcaccaaacacacatgtgtttttccaacaaccgcaaactca 32919402  T
Q  132 gcatccgcaaggaagaaaatcaaaaaacccccaacacaacataacccacaagctc 186  Q
    ||| || ||| ||||| ||||| |||||||||||||||||| |||||||||||||    
T  32919401 gcacccacaaagaagacaatcacaaaacccccaacacaacacaacccacaagctc 32919347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 188 - 358
Target Start/End: Complemental strand, 38149327 - 38149163
Alignment:
Q  188 cgaactcacgaccacaaaagaaagagacagtgaagatttagcctcccaactcaacaccaaacaccaccacttgtgatacctatcaccaacaaacaccaaa 287  Q
    ||||||||| |||||| |||||||||||| | ||   || ||||||||||||||||||||   ||||||||||||||||  ||||||||||| |||||||    
T  38149327 cgaactcaccaccacacaagaaagagacaataaac--ttcgcctcccaactcaacaccaa---ccaccacttgtgatactcatcaccaacaaccaccaaa 38149233  T
Q  288 atcaccagcaactcaatacaccacggccttagatctgaagatcaccacatgcagactacaccaccaccact 358  Q
    || |||| |||||||||| |||| | ||||||||||| ||||||||| |  |||||| || ||||||||||    
T  38149232 ataaccatcaactcaataaaccatgaccttagatctg-agatcaccaaacacagactgcatcaccaccact 38149163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 186 - 372
Target Start/End: Complemental strand, 32919323 - 32919144
Alignment:
Q  186 cacgaactcacgaccacaaaagaaagagacagtgaagatttagcctcccaactcaacaccaaacaccaccacttgtgatacctatcaccaacaaacacca 285  Q
    ||||||||||| |||||| |||||||||| ||||||   || ||||||||||||||||||||   ||||||||||||||||| ||||||||||| ||||     
T  32919323 cacgaactcaccaccacacaagaaagagatagtgaac--ttcgcctcccaactcaacaccaa---ccaccacttgtgatacccatcaccaacaaccacc- 32919230  T
Q  286 aaatcaccagcaactcaatacaccacggccttagatctgaagatcaccacatgcagactacaccaccaccacttggacatcacccaa 372  Q
    |||| |||| |||||||||| |  | | |||||||| || ||||||||| |  |||||| || |||||||||||| |||||| ||||    
T  32919229 aaataaccatcaactcaataaattatgaccttagatatg-agatcaccaaacacagactgcatcaccaccacttgaacatcatccaa 32919144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 32946931 - 32946770
Alignment:
Q  19 acatcatcacctcacaccaccatcacctcctccacatagatctgaatcggaaggaaacgaccaccgcacacaaacaccagacaacctgtgtttttctaac 118  Q
    |||||| ||||| |||||||||||||||||||||||||||| || ||| ||||||||| |||||| |||| |||||||||||||||||||||||||||||    
T  32946931 acatcaccaccttacaccaccatcacctcctccacatagatttggatcagaaggaaacaaccaccacacaaaaacaccagacaacctgtgtttttctaac 32946832  T
Q  119 agccgcaaactcagcatccgcaaggaagaaaatcaaaaaacc-cccaacacaacataaccca 179  Q
    ||| ||||||| |||| |||||||||||||||||| |||||| |||||||||||| ||||||    
T  32946831 agctgcaaacttagcacccgcaaggaagaaaatcacaaaacctcccaacacaacacaaccca 32946770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 186 - 310
Target Start/End: Complemental strand, 32946739 - 32946617
Alignment:
Q  186 cacgaactcacgaccacaaaagaaagagacagtgaagatttagcctcccaactcaacaccaaacaccaccacttgtgatacctatcaccaacaaacacca 285  Q
    ||||||||||| |||||| ||||||||  | ||||| |||| ||||||||| |||||| |||  ||||||||||||||||| |||||||||||| |||||    
T  32946739 cacgaactcaccaccacacaagaaaga--cggtgaacatttcgcctcccaaatcaacatcaacaaccaccacttgtgatacatatcaccaacaaccacca 32946642  T
Q  286 aaatcaccagcaactcaatacacca 310  Q
    |||| ||||  ||||||||| ||||    
T  32946641 aaattaccattaactcaataaacca 32946617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 36057779 - 36057714
Alignment:
Q  85 cacacaaacaccagacaacctgtgtttttctaacagccgcaaactcagcatccgcaaggaagaaaa 150  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  36057779 cacaaaaacaccagacaacttgtgtttttctaacagccgcaaactcagcatccacaaggaagaaaa 36057714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 36058907 - 36058842
Alignment:
Q  85 cacacaaacaccagacaacctgtgtttttctaacagccgcaaactcagcatccgcaaggaagaaaa 150  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  36058907 cacaaaaacaccagacaacttgtgtttttctaacagccgcaaactcagcatccacaaggaagaaaa 36058842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 99 - 151
Target Start/End: Original strand, 27109901 - 27109953
Alignment:
Q  99 acaacctgtgtttttctaacagccgcaaactcagcatccgcaaggaagaaaat 151  Q
    |||||||||||||||||||||| ||||||||||||| || |||||||||||||    
T  27109901 acaacctgtgtttttctaacaggcgcaaactcagcaaccacaaggaagaaaat 27109953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 36592967 - 36593134
Alignment:
Q  19 acatcatcacctcacaccaccatcacctcctccacatagatctgaatcggaaggaaacgaccaccgcacacaaacaccagacaacctgtgtttttctaac 118  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||| | |||| |||| |||||||||||| | |||||||||| |||    
T  36592967 acatcaccacctcacaccaccatcacctcctccacatagatctggatcagaaggaaacaatcaccacacaaaaacaccagacagcatgtgtttttccaac 36593066  T
Q  119 agccgcaaactcagcatccgcaaggaagaaaatcaaaaaacccccaacacaacataacccacaagctc 186  Q
    | ||||||||||| || || ||||||||| ||||| |||||||||||||||||| |||||||||||||    
T  36593067 aaccgcaaactcaacacccacaaggaagacaatcacaaaacccccaacacaacacaacccacaagctc 36593134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 5051451 - 5051582
Alignment:
Q  19 acatcatcacctcacaccaccatcacctcctccacatagatctgaatcggaaggaaacgaccaccgcacacaaacaccagacaacctgtgtttttctaac 118  Q
    |||||| ||||||||||  ||||||||||||||||||||||||| || |||||||||| |||||| |||| |||||||||||||  ||| |||||||||     
T  5051451 acatcaccacctcacacacccatcacctcctccacatagatctggattggaaggaaacaaccaccacacaaaaacaccagacaatttgtatttttctaag 5051550  T
Q  119 agccgcaaactcagcatccgcaaggaagaaaa 150  Q
    ||||||||||||||||  ||||||||||||||    
T  5051551 agccgcaaactcagcacacgcaaggaagaaaa 5051582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 228 - 372
Target Start/End: Original strand, 36593197 - 36593337
Alignment:
Q  228 gcctcccaactcaacaccaaacaccaccacttgtgatacctatcaccaacaaacaccaaaatcaccagcaactcaatacaccacggccttagatctgaag 327  Q
    ||||||||||||||||||||   ||||||||||||||||| ||||| ||||| ||||||||| |||| ||||||||||  ||| | ||||||||||| ||    
T  36593197 gcctcccaactcaacaccaa---ccaccacttgtgatacccatcacaaacaaccaccaaaataaccatcaactcaataatccatgaccttagatctg-ag 36593292  T
Q  328 atcaccacatgcagactacaccaccaccacttggacatcacccaa 372  Q
    ||||||| |  ||||||||| ||||||||||||||||||| ||||    
T  36593293 atcaccaaacacagactacatcaccaccacttggacatcatccaa 36593337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 9e-49; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 25498904 - 25499054
Alignment:
Q  19 acatcatcacctcacaccaccatcacctcctccacatagatctgaatcggaaggaaacgaccaccgcacacaaacaccagacaacctgtgtttttctaac 118  Q
    |||||| ||||| |||||||||||||||||||||||||||| || ||||||||||||| |||||| | || |||||||||| ||| ||||||||||||||    
T  25498904 acatcaccaccttacaccaccatcacctcctccacatagatatggatcggaaggaaacaaccaccacgcataaacaccagataacttgtgtttttctaac 25499003  T
Q  119 agccgcaaactcagcatccgcaaggaagaaaatcaaaaaacccccaacaca 169  Q
    ||||||||||||| |||||||||||||||| |||| |||||||||||||||    
T  25499004 agccgcaaactcaacatccgcaaggaagaagatcacaaaacccccaacaca 25499054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 26 - 150
Target Start/End: Complemental strand, 51056817 - 51056693
Alignment:
Q  26 cacctcacaccaccatcacctcctccacatagatctgaatcggaaggaaacgaccaccgcacacaaacaccagacaacctgtgtttttctaacagccgca 125  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||  ||| ||||||||||||||||||||| |||||||| |||||    
T  51056817 cacctcacaccaccatcacctcctccacatagatctggatcagaaggaaacaaccaccatacaaaaacaccagacaacctgtgttgttctaacaaccgca 51056718  T
Q  126 aactcagcatccgcaaggaagaaaa 150  Q
    ||||||||| | | |||||||||||    
T  51056717 aactcagcacctgtaaggaagaaaa 51056693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 189 - 374
Target Start/End: Original strand, 49358815 - 49358996
Alignment:
Q  189 gaactcacgaccacaaaagaaagagacagtgaagatttagcctcccaactcaacaccaaacaccaccacttgtgatacctatcaccaacaaacaccaaaa 288  Q
    ||||||||  ||||| ||||||||||||||||| |||| |||| ||| |||||||||||| |||||||||||||||||| ||||||||||| ||||||||    
T  49358815 gaactcaccgccacacaagaaagagacagtgaacatttcgccttccacctcaacaccaaaaaccaccacttgtgatacccatcaccaacaaccaccaaaa 49358914  T
Q  289 tcaccagcaactcaatacaccacggccttagatctgaagatcaccacatgcagactacaccaccaccacttggacatcacccaaga 374  Q
    ||||||  |||| |||| ||||   ||||||||||| | ||||||||| ||| |||    || |||||||||||||||||||||||    
T  49358915 tcaccatgaacttaataaaccataaccttagatctg-atatcaccacacgcaaact---gcatcaccacttggacatcacccaaga 49358996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 49358642 - 49358743
Alignment:
Q  19 acatcatcacctcacaccaccatcacctcctccacatagatctgaatcggaaggaaacgaccaccgcacacaaacaccagacaacctgtg-tttttctaa 117  Q
    |||||| |||||||||||||||| |||||||||||||||       ||| |||||||| |||||| |||| |||||| ||||||| |||| |||||||||    
T  49358642 acatcaccacctcacaccaccataacctcctccacatag-------tcgaaaggaaacaaccaccacacaaaaacactagacaacttgtgctttttctaa 49358734  T
Q  118 cagccgcaa 126  Q
    || ||||||    
T  49358735 cacccgcaa 49358743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 136 - 186
Target Start/End: Original strand, 49358738 - 49358788
Alignment:
Q  136 ccgcaaggaagaaaatcaaaaaacccccaacacaacataacccacaagctc 186  Q
    |||||||||||||||||| |||||||| ||||||||| |||||||||||||    
T  49358738 ccgcaaggaagaaaatcacaaaaccccaaacacaacacaacccacaagctc 49358788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 38258888 - 38258945
Alignment:
Q  19 acatcatcacctcacaccaccatcacctcctccacatagatctgaatcggaaggaaac 76  Q
    |||||| |||||||||||||||  ||||||| |||||||||||| |||||||| ||||    
T  38258888 acatcaccacctcacaccaccaaaacctccttcacatagatctggatcggaagaaaac 38258945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 17113716 - 17113683
Alignment:
Q  19 acatcatcacctcacaccaccatcacctcctcca 52  Q
    |||||| |||||||||||||||||||||||||||    
T  17113716 acatcaccacctcacaccaccatcacctcctcca 17113683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 6e-47; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 27632214 - 27632047
Alignment:
Q  19 acatcatcacctcacaccaccatcacctcctccacatagatctgaatcggaaggaaacgaccaccgcacacaaacaccagacaacctgtgtttttctaac 118  Q
    |||||| ||||||| ||||||| ||||||||| ||| ||||||| ||||||||||||| |||||| |||| |||||||| ||||| |||| |||||||||    
T  27632214 acatcaccacctcataccaccagcacctcctctacacagatctggatcggaaggaaacaaccaccacacaaaaacaccaaacaacttgtgcttttctaac 27632115  T
Q  119 agccgcaaactcagcatccgcaaggaagaaaatcaaaaaacccccaacacaacataacccacaagctc 186  Q
    |||||||||||||||| ||||||| |||||||||| |||| ||||||||||||| |||||| ||||||    
T  27632114 agccgcaaactcagcacccgcaagaaagaaaatcacaaaatccccaacacaacacaacccataagctc 27632047  T

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Target: chr5; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 36607890 - 36607723
Alignment:
Q  19 acatcatcacctcacaccaccatcacctcctccacatagatctgaatcggaaggaaacgaccaccgcacacaaacaccagacaacctgtgtttttctaac 118  Q
    |||||| |||||||||||||||||| |||||||||||| ||||| || |||||||||| ||||||   || ||||| |||||||||||||||||||||||    
T  36607890 acatcaccacctcacaccaccatcaactcctccacataaatctggattggaaggaaacaaccaccaagcaaaaacatcagacaacctgtgtttttctaac 36607791  T
Q  119 agccgcaaactcagcatccgcaaggaagaaaatcaaaaaacccccaacacaacataacccacaagctc 186  Q
    |||| |||||||   | |||||||||||| ||||| |||| ||||||||||||| |||||| ||||||    
T  36607790 agccacaaactccatacccgcaaggaagacaatcacaaaaaccccaacacaacacaacccataagctc 36607723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 33758231 - 33758362
Alignment:
Q  19 acatcatcacctcacaccaccatcacctcctccacatagatctgaatcggaaggaaacgaccaccgcacacaaacaccagacaacctgtgtttttctaac 118  Q
    |||||| |||||||||||||||||||||| |||||| ||||||| |||||||||||||  ||||| |||  |||||||||||||||||||||||||||||    
T  33758231 acatcaccacctcacaccaccatcacctcatccacaaagatctggatcggaaggaaacatccaccacactaaaacaccagacaacctgtgtttttctaac 33758330  T
Q  119 agccgcaaactcagcatccgcaaggaagaaaa 150  Q
     ||||||||||||| | || |||| |||||||    
T  33758331 ggccgcaaactcagtacccacaagaaagaaaa 33758362  T

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Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 9436482 - 9436612
Alignment:
Q  19 acatcatcacctcacaccaccatcacctcctccacatagatctgaatcggaaggaaacgaccaccgcacacaaacaccagacaacctgtgtttttctaac 118  Q
    |||||| ||||||||||| |||| |||||||||||||||||||| |||||||||||||   |||| |||| |||||| ||| ||| |||||||||||||     
T  9436482 acatcaccacctcacacccccattacctcctccacatagatctggatcggaaggaaacatacaccacacaaaaacactagaaaacatgtgtttttctaag 9436581  T
Q  119 agccgcaaactcagcatccgcaaggaagaaa 149  Q
    |||||||||||||||| ||||||||||||||    
T  9436582 agccgcaaactcagcacccgcaaggaagaaa 9436612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 271 - 375
Target Start/End: Complemental strand, 27631977 - 27631874
Alignment:
Q  271 caccaacaaacaccaaaatcaccagcaactcaatacaccacggccttagatctgaagatcaccacatgcagactacaccaccaccacttggacatcaccc 370  Q
    ||||||||| |||||||||||||| |||||||||| | ||   |||||||||||| ||||||||||||||||||||| ||||||||  ||||||||||||    
T  27631977 caccaacaaccaccaaaatcaccatcaactcaataaatcattaccttagatctga-gatcaccacatgcagactacatcaccaccatgtggacatcaccc 27631879  T
Q  371 aagat 375  Q
    |||||    
T  27631878 aagat 27631874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 188 - 291
Target Start/End: Complemental strand, 36607697 - 36607593
Alignment:
Q  188 cgaactcacgaccacaaaagaaagagacagtgaagatttagcctcccaactcaacacc-aaacaccaccacttgtgatacctatcaccaacaaacaccaa 286  Q
    ||||||||| | ||||  ||||||||||| |||| |||| |||||||||||||||||| ||||||||||||| |||||||| ||||| ||||| ||||||    
T  36607697 cgaactcactatcacacgagaaagagacattgaacatttcgcctcccaactcaacaccaaaacaccaccactcgtgatacccatcactaacaaccaccaa 36607598  T
Q  287 aatca 291  Q
    |||||    
T  36607597 aatca 36607593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 27632014 - 27631963
Alignment:
Q  205 aagaaagagacagtgaagatttagcctcccaactcaacaccaaacaccacca 256  Q
    |||||||||||| |||| |||| ||||||||||||||||||||  |||||||    
T  27632014 aagaaagagacaatgaacatttcgcctcccaactcaacaccaacaaccacca 27631963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 47432 - 47301
Alignment:
Q  19 acatcatcacctcacaccaccatcacctcctccacatagatctgaatcggaaggaaacgaccaccgcacacaaacaccagacaacctgtgtttttctaac 118  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||| |||  |  |||||| |||||||||||||||||||    
T  47432 acatcaccacctcacaccaccatcacctcctccacatagatctggatcagaaggaaacaaccaccacacgaattcaccaggcaacctgtgtttttctaac 47333  T
Q  119 agccgcaaactcagcatccgcaaggaagaaaa 150  Q
    || ||||||||||||| |||||||||||||||    
T  47332 agtcgcaaactcagcacccgcaaggaagaaaa 47301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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