View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0810_low_24 (Length: 378)
Name: NF0810_low_24
Description: NF0810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0810_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 19 - 365
Target Start/End: Complemental strand, 22429277 - 22428931
Alignment:
| Q |
19 |
ctcccaactgatttgtactaaatgagccacttggcacaataacatactcactttatctcattattattattattgtaataaaataattaaatctcatgtt |
118 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
22429277 |
ctcccaactgatttctactaaatgagccacttggcacaataacatactcactttatctcattattattattattataataaaataattaaatctcatgtt |
22429178 |
T |
|
| Q |
119 |
tagtctctacccnnnnnnntctcatgtttagaatatttcaaaatttaaaattatttgtcactttatattaagattattttaggagatttataataaggtt |
218 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22429177 |
tagtctctacccaaaaaaatctcatgtttagaatatttcaaaatttaaaattatttgtcactttatattaagattattttaggagatttataataaggtt |
22429078 |
T |
|
| Q |
219 |
gcatttcattttcatcataggatgtgtttttgagagaaaagtttagttaatagtatcaattttttaattaaatagttaatgaattgataaaccaaagatt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
22429077 |
gcatttcattttcatcataggatgtgtttttgagagaaaagtttagttaatagtatcaatttgttaattaaatagttaatgaattgataaaccaaagatt |
22428978 |
T |
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| Q |
319 |
tttcaaacagggaataggagaacatatgtttattttttctttgtcct |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22428977 |
tttcaaacagggaataggagaacatatgtttattttttctttgtcct |
22428931 |
T |
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