View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0810_low_25 (Length: 367)
Name: NF0810_low_25
Description: NF0810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0810_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 100 - 338
Target Start/End: Complemental strand, 47197817 - 47197579
Alignment:
| Q |
100 |
tctccaacaatatccacctttgattctgttttccaatataaacagttattacattatagttcaaaatatttacttagttaaaaatgttattacgaatatt |
199 |
Q |
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| T |
47197817 |
tctccacccatatccacctttgattctgttttccaatataaacagttattacattatagttcaaaatatttacttagttaaaaatgttattacgaatatt |
47197718 |
T |
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| Q |
200 |
aataatcaaatttaacttactttgatgtaaaccagttgacgaggtttgctatgaaaattcctatggtaatgttcagctgaaacataatgttaagtgctcc |
299 |
Q |
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| T |
47197717 |
attaatcaaatttaacttactttgatgtaaaccagttgacaaggtttgctatgaaaattcctatggtaatattcagctgaaacataatgttaagtgctcc |
47197618 |
T |
|
| Q |
300 |
acgtattcttgttggtgctatctcagatagaaacactgg |
338 |
Q |
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||| ||||||||||||||||| ||||||||||| ||||| |
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| T |
47197617 |
acgaattcttgttggtgctatttcagatagaaaaactgg |
47197579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 180 - 338
Target Start/End: Complemental strand, 47184858 - 47184700
Alignment:
| Q |
180 |
aaaatgttattacgaatattaataatcaaatttaacttactttgatgtaaaccagttgacgaggtttgctatgaaaattcctatggtaatgttcagctga |
279 |
Q |
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|||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
47184858 |
aaaatgttattatgaagattattaatcaaatttaacttactttgatgtaaaccagttgacaaggtttgctatgaaaattcctatggtaatgttcagctga |
47184759 |
T |
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| Q |
280 |
aacataatgttaagtgctccacgtattcttgttggtgctatctcagatagaaacactgg |
338 |
Q |
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| T |
47184758 |
aacataatgttaagtgctccacgaattcttgttggtgctatttcagatagaaaaactgg |
47184700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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