View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0810_low_28 (Length: 331)
Name: NF0810_low_28
Description: NF0810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0810_low_28 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 16 - 331
Target Start/End: Complemental strand, 23665495 - 23665183
Alignment:
| Q |
16 |
atatcttgtgcaatcacacaattgaaacatcaacatcatcaattcatgatcacgannnnnnnnaatgtaataaaataatgaatttaaaatttaaatcgtc |
115 |
Q |
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| T |
23665495 |
atatcttgtgcaatcacacagttgaaacatcaacattatcaattcatgatcacgattttttttaatgtaataaaataatgaatttaaaatctaaatcgtc |
23665396 |
T |
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| Q |
116 |
taatcttggtataatacctaacgatgtgcggaatgtgtgaatagatacctccacaccttgctactctcacgttcgtcattgttatgtagcaattatgttc |
215 |
Q |
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| T |
23665395 |
taatcttggtataatacctaacgatatgcggaatgtgtgaatgga---atccacaccttgctactctcacgttcgtcattgttatgtagcaattatgttc |
23665299 |
T |
|
| Q |
216 |
tatgtctgaatttnnnnnnnnnnnnnnnnnnnctatccattaatccagttatactagcaagtacgatgtaagcagcttccttgtaatcaaacttttacac |
315 |
Q |
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||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||| ||| |||| |
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| T |
23665298 |
tatgtctgaatttaaaaaaaaaaaaaaaaaaactatccattaatacagttatactaacaagtacgatgtaagcagcttccttggaatcaaaatttgacac |
23665199 |
T |
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| Q |
316 |
tactgaggaaattatt |
331 |
Q |
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|||||||||||||||| |
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| T |
23665198 |
tactgaggaaattatt |
23665183 |
T |
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