View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0810_low_44 (Length: 251)
Name: NF0810_low_44
Description: NF0810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0810_low_44 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 251
Target Start/End: Original strand, 40692190 - 40692427
Alignment:
| Q |
14 |
gaagagtgaaattggatcaattttttagtagaaattgtttggtggaaaatgaattgaatcaaacggagtaagatcaagtgaacttggttcagtagttatt |
113 |
Q |
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| T |
40692190 |
gaagagtgaaattggatcaattttttagtagaaattgtttggtggaaaatgaattgaatcaaacggagtaagatcaactgaacttggttcagtagttatt |
40692289 |
T |
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| Q |
114 |
ttcattagaggtaaatggatcagttcctagcattgagaaaatagatcactgacttttttcttttaaaattgaagtatataaatttctgtgacagatttaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40692290 |
ttcattagaggtaaatggatcagttcctagcattcagaaaatagatcactgacttttttcttttaaaattgaagtatataaatttctgtgacagatttaa |
40692389 |
T |
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| Q |
214 |
ttggtgtcatgtggtccacttgattcatgaagaatact |
251 |
Q |
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| T |
40692390 |
ttggtgtcatgtggtccacttgattcatgaagaatact |
40692427 |
T |
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