View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0810_low_46 (Length: 248)
Name: NF0810_low_46
Description: NF0810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0810_low_46 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 33571795 - 33571556
Alignment:
| Q |
1 |
cgccaggatcttcatcattttcttcattttcttcctcaggcactcctaataatatgccacagaagaataatgtggatgaaaagcacctttgggatggtcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33571795 |
cgccaggatcttcatcattttcttcattttcttcctcaggcactcctaataatatgccacagaagaataatgtggatgaaaagcacctttgggatggtcc |
33571696 |
T |
|
| Q |
101 |
agcaattgaagagattttgattgattccgatgatgataaagatggagaaatgggaaaaccaaaaggatttgttagtgaaatgtgttcaaagattattggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33571695 |
agcaattgaagagattttgattgattccgatgatgataaagatggagaaatgggaaaaccaaaaggatttgttagtgaaatgtgttcaaagattattggt |
33571596 |
T |
|
| Q |
201 |
ggtaatgatcgtgaaaagattgaatttagatgcatctctg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33571595 |
ggtaatgatcgtgaaaagattgaatttagatgcatctctg |
33571556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 208 times since January 2019
Visitors: 5832