View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0810_low_50 (Length: 223)
Name: NF0810_low_50
Description: NF0810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0810_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 5470310 - 5470195
Alignment:
| Q |
1 |
gcgtcttctcctgcatcagcctccttccttttataaaaaatgtttgacgttaccaccacacagactggaagtggtccagcctttcacacgtgaagacgct |
100 |
Q |
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| T |
5470310 |
gcgtcttctcctgcatcagtctccttccttttataaaaaatgtttgatgttaccaccaca--gactggaagtggtccagcctttcacacgtgaagacgct |
5470213 |
T |
|
| Q |
101 |
cctccctgctaatgctat |
118 |
Q |
| |
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|||||||||||||||||| |
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| T |
5470212 |
cctccctgctaatgctat |
5470195 |
T |
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