View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0810_low_52 (Length: 222)
Name: NF0810_low_52
Description: NF0810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0810_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 36524827 - 36525018
Alignment:
| Q |
1 |
tggactggtatggaattcttcaggcagaaagtctctccgaggaagccatcataaggaaacagtacagaaagcttgcactgctacttcatcctgataaaaa |
100 |
Q |
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| T |
36524827 |
tggactggtatggaattcttcagacagaaagtctctccgaggaagcaatcataaagaaacagtacagaaaactcggattgctacttcatcttgataaaaa |
36524926 |
T |
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| Q |
101 |
taaatttgctggtgcagaagctgcgttcaagttgattggggaagccaatagcgttttgactgaccaagcaaagcgatcattatacgacatga |
192 |
Q |
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| T |
36524927 |
taaatttactggtgcagaagctgcgttcaagttgattggggaagccaatagcgtgttgactgaccaagcaaagtgatctttataggacatga |
36525018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 36531162 - 36531351
Alignment:
| Q |
1 |
tggactggtatggaattcttcaggcagaaagtctctccgaggaagccatcataaggaaacagtacagaaagcttgcactgctacttcatcctgataaaaa |
100 |
Q |
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| T |
36531162 |
tggactggtatggagttcttcagactgaaaaattatccgaggaagcaatcataaagaaacagtacaagaagcttgcactgctacttcatcctgataaaaa |
36531261 |
T |
|
| Q |
101 |
taaatttgctggtgcagaagctgcgttcaagttgattggggaagccaatagcgttttgactgaccaagcaaagcgatcattatacgacat |
190 |
Q |
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| T |
36531262 |
taaatctgctggtgcagaagctgctttcaagttgattggggaagccaatagggtgttgagtgataaagcaacgcggtctttatacgacat |
36531351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 9 - 189
Target Start/End: Complemental strand, 26306169 - 26305989
Alignment:
| Q |
9 |
tatggaattcttcaggcagaaagtctctccgaggaagccatcataaggaaacagtacagaaagcttgcactgctacttcatcctgataaaaataaatttg |
108 |
Q |
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| T |
26306169 |
tatgaaattcttcagacacatagattctccgaggaagcaatcataaagacgcagtacagaaagctcgcactgctacttcatcctgataaaaataaatttt |
26306070 |
T |
|
| Q |
109 |
ctggtgcagaagctgcgttcaagttgattggggaagccaatagcgttttgactgaccaagcaaagcgatcattatacgaca |
189 |
Q |
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| T |
26306069 |
ctggtgctgaagctgctttcaagttgattggagaagccaatagggttttgagtgaccaagcacaacgatctttatatgaca |
26305989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 20716296 - 20716220
Alignment:
| Q |
1 |
tggactggtatggaattcttcaggcagaaagtctctccgaggaagccatcataaggaaacagtacagaaagcttgca |
77 |
Q |
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| T |
20716296 |
tggactggtatgaaattcttcagacagaaagactctccgaggaaacaatcacaaagaaacagtacagaaagattgca |
20716220 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 51 - 184
Target Start/End: Complemental strand, 47090668 - 47090535
Alignment:
| Q |
51 |
ataaggaaacagtacagaaagcttgcactgctacttcatcctgataaaaataaatttgctggtgcagaagctgcgttcaagttgattggggaagccaata |
150 |
Q |
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|||| ||| ||||| | |||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||| ||||||||||| | ||| || || | |
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| T |
47090668 |
ataaagaagcagtataaaaagcttgcactgctacttcatcctgataaaaataaatctgctggggcagaggctgctttcaagttgatcgtggatgctaaca |
47090569 |
T |
|
| Q |
151 |
gcgttttgactgaccaagcaaagcgatcattata |
184 |
Q |
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| T |
47090568 |
gagtattgagtgaccaaacaaagcgttctttata |
47090535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 87 - 145
Target Start/End: Original strand, 6791477 - 6791535
Alignment:
| Q |
87 |
catcctgataaaaataaatttgctggtgcagaagctgcgttcaagttgattggggaagc |
145 |
Q |
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| T |
6791477 |
catcctgacaaaaacaagtttgctggtgcagaagctgcatttaagctgattggggaagc |
6791535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 145
Target Start/End: Complemental strand, 49156858 - 49156796
Alignment:
| Q |
83 |
acttcatcctgataaaaataaatttgctggtgcagaagctgcgttcaagttgattggggaagc |
145 |
Q |
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| T |
49156858 |
acttcatcctgataaaaacaagtttgccggtgctgaagctgcatttaagctgattggagaagc |
49156796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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