View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0810_low_59 (Length: 204)
Name: NF0810_low_59
Description: NF0810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0810_low_59 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 62; Significance: 5e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 127 - 204
Target Start/End: Complemental strand, 760607 - 760530
Alignment:
| Q |
127 |
caatccgtttgaatcatgttaaagaaaaagctgatacacttgtagcatgacatcataattcaatttccaaatggattc |
204 |
Q |
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| T |
760607 |
caatacgtttgaatcatgttaaagaaaaagctgatacacttgtggcatgacatcatcattcaatttacaaatggattc |
760530 |
T |
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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 6026218 - 6026174
Alignment:
| Q |
1 |
acaaccataacatttatgctcacagcttggtggacttgaccctat |
45 |
Q |
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| T |
6026218 |
acaatcatagcatttatgctcacagcttggtggacttgaccctat |
6026174 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 42824206 - 42824166
Alignment:
| Q |
5 |
ccataacatttatgctcacagcttggtggacttgaccctat |
45 |
Q |
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|||||||| || ||||||||||||||||||||||||||||| |
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| T |
42824206 |
ccataacacttgtgctcacagcttggtggacttgaccctat |
42824166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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