View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0810_low_7 (Length: 580)
Name: NF0810_low_7
Description: NF0810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0810_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 40 - 432
Target Start/End: Original strand, 9855709 - 9856125
Alignment:
| Q |
40 |
aaagatgcatttttagctctcatatgaaaagctatcacaagcaaattgaataaggatcatcttcaggaaattcttatgattgttgtttagaaaaatcgaa |
139 |
Q |
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| T |
9855709 |
aaagatgcattttgagctctcatatgaaaagttatcaccagcaaatcaaataaggatcatcttcaggaaattcttatgattgttgttttgaaaaatagaa |
9855808 |
T |
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| Q |
140 |
aatgtttggatgttgcaagat--------tactcaagtgttggtccatgaagaaacctggttttcaacatatta-----------------gaccagata |
214 |
Q |
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| T |
9855809 |
aatatttgaacattgcaagataagatcattactcaagtgttggtccaagaagaaacctggatttcaacttatttagacaagcctaaccttcgaccagata |
9855908 |
T |
|
| Q |
215 |
aaaaag-aaaacataaatgcacaaatcctagtccaagaagaaacctaaatttctgcaggcaaaattccctaaaatgatttaccttgtttctcatgaccct |
313 |
Q |
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| T |
9855909 |
aaaaaggaaaacaaaaatgcaaaaatgctagtccaagaagaaacctgaatttctggaggcaa--ttccctaaaatgatttagcttgtttctcatgaccct |
9856006 |
T |
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| Q |
314 |
cgacaagtctcagacgctgtcaaatttatatagcctgtaatgaacaatgctggcaatgaaagctggttccatcttttcgtcccattttgcacctaaagcc |
413 |
Q |
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| T |
9856007 |
caacaagtctcggacgctgtcaaatttatatcgcctgtaacgaccaatgttggcaatgaaagctggttccatcttttcgtcccattttacacctaaagcc |
9856106 |
T |
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| Q |
414 |
gctggagaagtgctctcta |
432 |
Q |
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| T |
9856107 |
agtggagcagtgctctcta |
9856125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 9817921 - 9817853
Alignment:
| Q |
11 |
ataatatgttcttggtgacatgtgttatcaaagatgcatttttagctctcatatgaaaagctatcacaa |
79 |
Q |
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| T |
9817921 |
ataatatgttcttggtgacatgtgttaacaaagatgcatttttagctctcatatgaaaagctgtcacaa |
9817853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 460
Target Start/End: Original strand, 9856151 - 9856185
Alignment:
| Q |
426 |
ctctctatcttcaagttccaccctgtcactaacgt |
460 |
Q |
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| T |
9856151 |
ctctctatcttcaagttccactctgtcactaacgt |
9856185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 414
Target Start/End: Complemental strand, 30980954 - 30980826
Alignment:
| Q |
286 |
aatgatttaccttgtttctcatgaccctcgacaagtctcagacgctgtcaaatttatatagcctgtaatgaacaatgctggcaatgaaagctggttccat |
385 |
Q |
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||||||||| ||||||||||| |||| | ||||||||| || |||| || ||||| ||| |||| || ||||| | ||||||||||||||||||| |
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| T |
30980954 |
aatgatttagtttgtttctcataacccgcaacaagtctcgaacactgttgaagttataacgccggtaacgaccaatgttaacaatgaaagctggttccat |
30980855 |
T |
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| Q |
386 |
cttttcgtcccattttgcacctaaagccg |
414 |
Q |
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|||||| ||||| || ||||||| |||| |
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| T |
30980854 |
cttttcatcccacttaccacctaaggccg |
30980826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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