View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0810_low_8 (Length: 559)
Name: NF0810_low_8
Description: NF0810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0810_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 30 - 549
Target Start/End: Complemental strand, 10468918 - 10468399
Alignment:
| Q |
30 |
ggtagaactcgccattgatttcattctgcatgattttgaaatggcaggtaggtggtgtattgttcactcttaatttgtggaatcaagctagcctcgcatt |
129 |
Q |
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| T |
10468918 |
ggtagaactcgccattgatttcattctgcatgattttgaaatggcaggtaggtggtgtattgttcactcgtaatttgtggaatcaagctagcctcgcatt |
10468819 |
T |
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| Q |
130 |
atcacttttcagcatggttttgttttcatcgaatatattttacctatctttttatcgaactttgaattagcatagtcttgtttccattgaaattggagag |
229 |
Q |
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| T |
10468818 |
atcacttttcagcatggttttgttttcatcgaatatattttacctatctttttatcaaactttgaattagcatagtcttgtttccattgaaattggagag |
10468719 |
T |
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| Q |
230 |
tcaattctaaaaagaaaatctcatttctatttaatattattgagctattgtaagacaaacttgattataattttgcaattttaaaattatttttgtatat |
329 |
Q |
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| T |
10468718 |
tcaattctaaaaagaaaatctcatttctatttaatattattgagctattgtaagtcaaatttgattataattttgcaattttaaaattatttttgtatat |
10468619 |
T |
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| Q |
330 |
ccataatttgattgagtagatagacccaccatttcaatgataatttggatatttacaaaaagttaaaaatttatatttttgggtttgtaatacgttagtc |
429 |
Q |
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| T |
10468618 |
ccataatttgatcgagtaaatagacccaccatttcaatgataatttggatatttacaaaaagttcaaaatttatatttttgggtttgtaatacattagtc |
10468519 |
T |
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| Q |
430 |
agaaattgaaaatgggtttatttgaagaaaaaggaagaagtaggataactttttagggaccattgtgattgtgtgtatgatttgttcacttgttaaattt |
529 |
Q |
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| T |
10468518 |
agaaattgaaaatgggtttatttcaagaaaaaggaagaagtaggatagctttttagggaccattgtgattgtgtgtatgatttgttcacttgttaaattt |
10468419 |
T |
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| Q |
530 |
gtgtacatgttttgtctctg |
549 |
Q |
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| T |
10468418 |
gtgtacatgttttgtctctg |
10468399 |
T |
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