View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0810_low_9 (Length: 556)
Name: NF0810_low_9
Description: NF0810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0810_low_9 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 77 - 556
Target Start/End: Original strand, 10468034 - 10468514
Alignment:
| Q |
77 |
cagagagcaaataaagacagatattttttcacgagctaaatggtgaagcaaacagacaaaccaacagggtactgacacatatacaggtaggggccaacnn |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10468034 |
cagagagcaaataaagacagatattttttcacgagctaaatggtgaagcaaacagacaaaccaacagggtactgacacatatacaggtaggggccaacaa |
10468133 |
T |
|
| Q |
177 |
nnnnntccnnnnnnnaacaaagtaaaaatctcaatcaaagaaaggtatttattacaaagaaatgtaccttgttgagtttgagacgatcatccaagattct |
276 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10468134 |
aaaaatcctttttttaacaaagtaaaaatctcaatcaaagaaaggtatttattacaaagaaatgtaccttgttgagtttgagacgatcatccaagattct |
10468233 |
T |
|
| Q |
277 |
accttccgatgtgaagagaaagccttcagccattttgtatagcaagtgatcgtaccctctttcatccgcaaccaaaaattctctttccccaaaatctaca |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10468234 |
accttccgatgtgaagagaaagccttcagccattttgtatagcaagtgatcgtaccctctttcatccgcaaccaaaaattctctttccccaaaatctaca |
10468333 |
T |
|
| Q |
377 |
tatgtagagattggttccacttctgcttacagtttttaaaa-ctaattaatctccaattttggaacagagacaaaacatgtacacaaatttaacaagtga |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10468334 |
tatgtagagattggttccacttctgcttacagtttttaaaagctaattaatctccaattttggaacagagacaaaacatgtacacaaatttaacaagtga |
10468433 |
T |
|
| Q |
476 |
acaaatcatacacacaatcacaatggtccctaaaaagttatcctacttcttcctttttctccaaataaacccattttcaat |
556 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10468434 |
acaaatcatacacacaatcacaatggtccctaaaaagctatcctacttcttcctttttcttgaaataaacccattttcaat |
10468514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1026 times since January 2019
Visitors: 5823