View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0811-Insertion-2 (Length: 410)
Name: NF0811-Insertion-2
Description: NF0811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0811-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 7 - 331
Target Start/End: Original strand, 53997934 - 53998258
Alignment:
| Q |
7 |
acttatcccggctctgtccgaagctcggtggaaattagcctcgacattacacttaagtctgccatattctggaatttgccacctcatattagagtcaata |
106 |
Q |
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| T |
53997934 |
acttatcccggctctgtccgaagctcggtggaaactagcatcgacattacacttaagtctgccatattctggaatttgccacctcatattagagtcaata |
53998033 |
T |
|
| Q |
107 |
ttagcttgttgtctgccactgttacgcaaatcctggaccgcataccactcctgccaaaaccggttaacattcaagcatatatcatgtgcacttaaatgct |
206 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
53998034 |
ttagctcgttgtctgccactgttacgcaaatcctggaccacataccactcctaccaaaaccagttaacattcaagcatatatcatgtgcacttaaatgct |
53998133 |
T |
|
| Q |
207 |
tttggttccaaatcatatcgtttctattgttccaaagcccccacaacagcatcatgaagcgttgttttaggtnnnnnnnnnnnnnnnnntacattgtttt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
53998134 |
tttggttccaaatcatatcgtttctattgttccaaagcccccacaacagcatcatgaagcgttgttttaggtaaaaaaaaaaaaaaaaatacattgtttt |
53998233 |
T |
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| Q |
307 |
gttttcttcggttaaaagaaacaca |
331 |
Q |
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| T |
53998234 |
gttttcttcggttaaaagaaacaca |
53998258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 328 - 410
Target Start/End: Original strand, 53998372 - 53998456
Alignment:
| Q |
328 |
cacagttcctttttcatgcttgcatctacgggatgnnnnnnnn--cattgcctgcatatcctctgtttaccatctctggtgttgt |
410 |
Q |
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| T |
53998372 |
cacagttcctttttcatgcttgcatctacgggatgttttttttttcattgcctgcatatcctctgtttaccatctctggtgttgt |
53998456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 7 - 275
Target Start/End: Original strand, 25700529 - 25700797
Alignment:
| Q |
7 |
acttatcccggctctgtccgaagctcggtggaaattagcctcgacattacacttaagtctgccatattctggaatttgccacctcatattagagtcaata |
106 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25700529 |
acttatcccggctctgtccgaagctcggtggaaactagcatcgacattacacttaagtctgccatattctggaatttgccacctcatattagagtcaata |
25700628 |
T |
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| Q |
107 |
ttagcttgttgtctgccactgttacgcaaatcctggaccgcataccactcctgccaaaaccggttaacattcaagcatatatcatgtgcacttaaatgct |
206 |
Q |
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| T |
25700629 |
ttagctcgttgtctgccactgttacgcaaatcctggaccacataccactcctaccaaaaccggttaacattcaagcatatatcatgtgcacttaaatgct |
25700728 |
T |
|
| Q |
207 |
tttggttccaaatcatatcgtttctattgttccaaagcccccacaacagcatcatgaagcgttgtttta |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25700729 |
tttggttccaaatcatatcgtttctattgttccaaagcccccacaacagcatcatgaagcgttgtttta |
25700797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 371 - 410
Target Start/End: Original strand, 25701016 - 25701055
Alignment:
| Q |
371 |
cattgcctgcatatcctctgtttaccatctctggtgttgt |
410 |
Q |
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| T |
25701016 |
cattgcctgcatatcctctgtttaccatctctggtgttgt |
25701055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 331
Target Start/End: Original strand, 25700817 - 25700852
Alignment:
| Q |
296 |
tacattgttttgttttcttcggttaaaagaaacaca |
331 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
25700817 |
tacattgttttgttttcttcggttaaaagaaacaca |
25700852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 10 - 270
Target Start/End: Complemental strand, 13088392 - 13088132
Alignment:
| Q |
10 |
tatcccggctctgtccgaagctcggtggaaattagcctcgacattacacttaagtctgccatattctggaatttgccacctcatattagagtcaatatta |
109 |
Q |
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|||||||| | |||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
13088392 |
tatcccggttttgtccgaagctcggtggaaactagcatcgacattacacataagtctgccatattctggaatttgccacctcatattaaagtcaatatca |
13088293 |
T |
|
| Q |
110 |
gcttgttgtctgccactgttacgcaaatcctggaccgcataccactcctgccaaaaccggttaacattcaagcatatatcatgtgcacttaaatgctttt |
209 |
Q |
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| T |
13088292 |
gcttgttgtctgccattgttacgcaaatcctggaccgcataccacttctgccaaaaccagttaacattcaagcatatatcatgtgcaactaaatgttttt |
13088193 |
T |
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| Q |
210 |
ggttccaaatcatatcgtttctattgttccaaagcccccacaacagcatcatgaagcgttg |
270 |
Q |
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|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
13088192 |
ggttccaaatcatatcgtttctattgttccaaagtcctcacaacagcatcatgaagcgttg |
13088132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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