View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0811_high_1 (Length: 888)
Name: NF0811_high_1
Description: NF0811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0811_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 508; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 29 - 567
Target Start/End: Complemental strand, 33698133 - 33697594
Alignment:
| Q |
29 |
agatccaatcccaggatccactcccgctcctctgccaagtcgaaccagggttctgataccacttgttgaagggtctgaggagcgttagaaacaacaacaa |
128 |
Q |
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| T |
33698133 |
agatccaatcccaggatccactcccgctcctctgccaagtctaaccagggttctgataccacctgttgaagggtctgaggagcgttagaaacaacaacaa |
33698034 |
T |
|
| Q |
129 |
accaatgctctagtacgacaacagagaggagatgctacctctaccaaaaaccttaaaacatcatgtatattaaccacttctcgtatttaacgttttggca |
228 |
Q |
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| T |
33698033 |
accaatgctctagtacgacaacagagaggagatgctacctctaccaaaaaccttaaaacatcatgtatattaaccacttctcgtatttaacgttttggca |
33697934 |
T |
|
| Q |
229 |
attaatagtcgacgtaggatataactactcacacttgaaca-aacaaccctaacaccagcgagacagaaaagagcaacaaagaacattataagatataca |
327 |
Q |
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| T |
33697933 |
attaatagtcgacatgggatataactactcacacttgaacagaacaaccctaacaccaacgagacagaaaagagcaacaaagaacattataagatataca |
33697834 |
T |
|
| Q |
328 |
agacgagcaccccacgcctatttccctatttacaatagttcacagttgcggtcctcatctgtaatttgaccgcaatataaagaatttagaggtctctcca |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33697833 |
agacgagcaccccacgcctatttccctatttacaatagttcacagttgcggtcctcatctgtaatttgaccgcaatataaagaatttagaggtctctcca |
33697734 |
T |
|
| Q |
428 |
gcaatattaagaaacactacggtccaaactcaatgcagacattcatcccatagtgaacaccaagagtcttacattaattatctcataacagaatatattt |
527 |
Q |
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| T |
33697733 |
gcaatattaaaaaacactacggtccaaactcaatgcagacattcatcccatagtgaacaccaagagtcttacattaattatctcataacagaatatattt |
33697634 |
T |
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| Q |
528 |
tcattctcatgatctcataaaagaatatattttggcataa |
567 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
33697633 |
tcattctcatgatctcataaaagaatatattttggcataa |
33697594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 612 - 877
Target Start/End: Complemental strand, 33697551 - 33697286
Alignment:
| Q |
612 |
ctccacacacgacagggcattaactgctttgttataaattgttcactatattgcacttatattatttgctgatttacaatagattgaccccttaagaccn |
711 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33697551 |
ctccacacatgacagggcattaactgctttgttataaattgttcagtatattgcacttatattatttgctgatttacaatagattgaccccttaagacct |
33697452 |
T |
|
| Q |
712 |
nnnnnngagtattttggtttacgtacacgcttgaattttactatgtcccttaagttggagaaaacaatattcttagcatttggttttattttgtagccct |
811 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33697451 |
ttttttgagtattttggtttacgtacacgcttgaattttactatgtcccttaagttggagaaaacaatattcttagcatttggttttattttgtagccct |
33697352 |
T |
|
| Q |
812 |
ttacggatataaagcaaatccatatggttcttttattcaaagaaaccttgtaatcttgaccttcat |
877 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33697351 |
ttacggatataaagcaaatccatatggttcttttattcaaagaaaccttgtaatcttgaccttcat |
33697286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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