View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0811_high_11 (Length: 442)
Name: NF0811_high_11
Description: NF0811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0811_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 30 - 411
Target Start/End: Original strand, 54770078 - 54770460
Alignment:
| Q |
30 |
gtagggaatcgtagacaaggtctctctttttattaatgtttatgttttggatccctc---------------tcctctcctgtagggaacgacgttgttg |
114 |
Q |
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| T |
54770078 |
gtagggaatcgtagacaaggtctctctttttattaatgtttatgttttggatccctctcctctcctctcctctcctctcctgtagggaacgacgttgttg |
54770177 |
T |
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| Q |
115 |
gatgtgcttgttcattttggtgaacgtggtggcaggcaaaggcatgaatagtcggtcggacttagtggtagagcaccatatatcacatatataccagctg |
214 |
Q |
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| T |
54770178 |
gatgtgcttgttcattttggtgaacgtggtggcaggcaaaggcatgaatagtcggtcggacttagtggtagagcaccatatatcacata----------- |
54770266 |
T |
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| Q |
215 |
acttgtattgacagctaaatttcaagagatcaataaaaaccagactatatacacactagt--tatacccttttcattaacaagttttggaccattgtnnn |
312 |
Q |
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| T |
54770267 |
-----tattgacagctaaatttcaagagatcaataaaaaccagactatatacacactagttatatacccttttcattaacaagttttggaccatcgtaaa |
54770361 |
T |
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| Q |
313 |
nnnnntatgtatccaacatttaatttcttaaaataaaattgagaaaaatgttaatttagacaagttactacgatatttattgtatgtaatcctctaaat |
411 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54770362 |
aaaaaaatatatccaacatttaatttcttaaaataaaattgagaaaaatgttaatttagacaagttactacgatatttattgtatgtaatcctctaaat |
54770460 |
T |
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