View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0811_high_28 (Length: 251)
Name: NF0811_high_28
Description: NF0811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0811_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 41071412 - 41071611
Alignment:
| Q |
1 |
ccaatcccagtaggttcaagttcaagtatatggcattaaattggttaggaaattttaatagatttttctttgatcacaagctgcacatgtctacctggtg |
100 |
Q |
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| T |
41071412 |
ccaatcccagtaggttcaagttcaagtatatggcattaaattggttaggaaattttaatagatttttctttgatcacaagctgcacatgtctacctggtg |
41071511 |
T |
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| Q |
101 |
atggggcccacctcatggatttggcacacgcaaatgttctgtaacatgaattatgaacactttattcatcaaccaaccaaccataccgtatgacgtttgt |
200 |
Q |
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| T |
41071512 |
atggggcccacctcatggatttggcacacgcaaatgttctgtaacatgaattatgaacactttattcatcaaccaaccaaccataccgtatgacgtttgt |
41071611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 41071657 - 41071701
Alignment:
| Q |
197 |
ttgtgttgtgttgagattttttggtttggtatctgttcctctctg |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41071657 |
ttgtgttgtgttgagattttttggtttggtatctgttcctttctg |
41071701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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