View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0811_high_29 (Length: 251)
Name: NF0811_high_29
Description: NF0811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0811_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 40844937 - 40845177
Alignment:
| Q |
1 |
atcatagtctaacataaaatttgtagtttagaaccatagatagt-atgtaatgtcgtctttgaattttaaaattaaatataagtactactaactaactat |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
40844937 |
atcatagtctaacataaaatttgtagtttagaaccatagatagttatgtaatgtcgtctttgaattttaaaattaaatataagtactactaactaacgat |
40845036 |
T |
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| Q |
100 |
gaatcaagtttaaccacttaatttctcgttatnnnnnnngtttaaccacttaattcaagtgattaatcaaattaataaggtactgaacaaatcaagttac |
199 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40845037 |
gaatcaagtttaaccacttaatttctcgttataaaaaaagtttaaccacttaattcaagtgattaatc-aattaataaggtactgaacaaatcaagttac |
40845135 |
T |
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| Q |
200 |
ctgcaagaagtcatacaaatcgttgctaatactgtcttcatc |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
40845136 |
ctgcaagaagtcatacaaatcgttgctaatactgtcttcatc |
40845177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 40851165 - 40851221
Alignment:
| Q |
185 |
aacaaatcaagttacctgcaagaagtcatacaaatcgttgctaatactgtcttcatc |
241 |
Q |
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|||| ||||||||||||||||||| ||||| | ||| ||||||| || ||||||||| |
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| T |
40851165 |
aacagatcaagttacctgcaagaaatcatatagatcattgctaacaccgtcttcatc |
40851221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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