View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0811_high_3 (Length: 680)
Name: NF0811_high_3
Description: NF0811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0811_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 536; Significance: 0; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 7 - 651
Target Start/End: Original strand, 2549872 - 2550502
Alignment:
| Q |
7 |
tccaataatatcttgatacaagattccaacataaaatctggtaattaaagtttattatcttatgatattttaaatttttagtatgccttaaaaaagatta |
106 |
Q |
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| T |
2549872 |
tccaataatatcttgatacaagattccaacataaaatctggtaattcaagtttattatcttatgatattttaaatttttagtatgccttaaaaaagatta |
2549971 |
T |
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| Q |
107 |
tatagatgtctaaaaaagattatattattttatgaaatatcattttatgagtcaaatggaataaataacatttgtgtcaatttaatttgatttccaattt |
206 |
Q |
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| T |
2549972 |
tatagatgtctaaaaaagattatattattttatga---------------gtcaaatagaataaataacat--gtgtcaatttaatttgatttccaattt |
2550054 |
T |
|
| Q |
207 |
ttcttttaaataggtgacgattgtattgccgtaaatggtggctccacttttgtcaatgctactcgggttacttgtggaccaggccatgggataaggttta |
306 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2550055 |
ttcttttaaataggtgacgattgtattgcagtaaatggtggctccacttttatcaatgctactcgggttacttgtggaccaggccatgggataaggttta |
2550154 |
T |
|
| Q |
307 |
taaatgattgtatattttaaatttatattattttta-ttgtagcttagtaaaaatgagagcaaagaattttagtgt--gtcattgtataaagacgactaa |
403 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2550155 |
taaatgattgtatattttaaatttatattatttttaattgtagcttagtaaaaatgagagcaaagaattttagtgtgtgtcattgtataaagacgactaa |
2550254 |
T |
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| Q |
404 |
caatctacatttctattttaaatctcatttcaaatgttaaaatatgatattgtttacaaacaaatgttaatttttagaataatatacaagtagttagagt |
503 |
Q |
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| T |
2550255 |
aaatctacatttctattttaaatctcatttcaaatgttaaaatatgatattgtttacaaacaaatgttaatttttagaataatatacaagtggttcgagt |
2550354 |
T |
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| Q |
504 |
ttgatttcttgacatcctcaaacttaatttggtgtgatatgattttaattttatattatacatatattaatgttttccaagaatctcatagaaatgtgta |
603 |
Q |
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| T |
2550355 |
ttgacttcttgacatcctcaaacttaatttggtgtgatatgattttaattttatattatacatatattaatgttttccaagaatctcatagaaatgtgta |
2550454 |
T |
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| Q |
604 |
tggtatgaattaaacagtgttggtagccttggtggaaatggagcaaat |
651 |
Q |
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| T |
2550455 |
tggtatgaattaaacagtgttggtagccttggtggaaatggagcaaat |
2550502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 213 - 310
Target Start/End: Original strand, 2541794 - 2541891
Alignment:
| Q |
213 |
taaataggtgacgattgtattgccgtaaatggtggctccacttttgtcaatgctactcgggttacttgtggaccaggccatgggataaggtttataaa |
310 |
Q |
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| T |
2541794 |
taaacaggtgatgattgtattgccatcaatggtggctcctcttttgtcaatgctacaaggattacttgtggacctggccatggaataaggtttataaa |
2541891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 204 - 310
Target Start/End: Original strand, 2565249 - 2565355
Alignment:
| Q |
204 |
tttttcttttaaataggtgacgattgtattgccgtaaatggtggctccacttttgtcaatgctactcgggttacttgtggaccaggccatgggataaggt |
303 |
Q |
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| T |
2565249 |
tttttcttttaaataggtgatgattgtattgcggttaacggtggctccttttttattaatattactcgggttacttgcggaccaggccatggaataaggt |
2565348 |
T |
|
| Q |
304 |
ttataaa |
310 |
Q |
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| T |
2565349 |
taataaa |
2565355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 213 - 310
Target Start/End: Original strand, 2532202 - 2532299
Alignment:
| Q |
213 |
taaataggtgacgattgtattgccgtaaatggtggctccacttttgtcaatgctactcgggttacttgtggaccaggccatgggataaggtttataaa |
310 |
Q |
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| T |
2532202 |
taaacaggtgatgattgtattgcagtcaatggtggttctacttttgtcaatgctataaggattacttgtggacctggccatggaataaggtttataaa |
2532299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 213 - 310
Target Start/End: Original strand, 2555618 - 2555715
Alignment:
| Q |
213 |
taaataggtgacgattgtattgccgtaaatggtggctccacttttgtcaatgctactcgggttacttgtggaccaggccatgggataaggtttataaa |
310 |
Q |
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| T |
2555618 |
taaataggtgatgattgtattgcgcttaatagtggctccttttttattaatgttactcgggttacttgcggaccaggccatggaataaggttaataaa |
2555715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 218 - 310
Target Start/End: Original strand, 1830237 - 1830329
Alignment:
| Q |
218 |
aggtgacgattgtattgccgtaaatggtggctccacttttgtcaatgctactcgggttacttgtggaccaggccatgggataaggtttataaa |
310 |
Q |
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| T |
1830237 |
aggtgatgattgcattgctgttaatggtggctctaattttatcaatgttaccggggttacctgtggacccggtcatgggataaggtttataaa |
1830329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 218 - 310
Target Start/End: Original strand, 1864682 - 1864774
Alignment:
| Q |
218 |
aggtgacgattgtattgccgtaaatggtggctccacttttgtcaatgctactcgggttacttgtggaccaggccatgggataaggtttataaa |
310 |
Q |
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| T |
1864682 |
aggtgatgattgcattgctgttaatggtggctctaattttatcaatgttaccggggttacctgtggacccggtcatgggataaggtttataaa |
1864774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 1830030 - 1830102
Alignment:
| Q |
29 |
attccaacataaaatctggtaattaaagttta--ttatcttatgatattttaaatttttagtatgccttaaaa |
99 |
Q |
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| T |
1830030 |
attccaacataaaatctggtaattaaactttatgtaatattataatattttaaatatttagtatgtcttaaaa |
1830102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 1864475 - 1864547
Alignment:
| Q |
29 |
attccaacataaaatctggtaattaaagttta--ttatcttatgatattttaaatttttagtatgccttaaaa |
99 |
Q |
| |
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||||||||||||||||||||||||||| |||| | || |||| ||||||||||| ||||||||| ||||||| |
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| T |
1864475 |
attccaacataaaatctggtaattaaactttatgtaatattataatattttaaatatttagtatgtcttaaaa |
1864547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 206 - 304
Target Start/End: Original strand, 2525071 - 2525169
Alignment:
| Q |
206 |
tttcttttaaataggtgacgattgtattgccgtaaatggtggctccacttttgtcaatgctactcgggttacttgtggaccaggccatgggataaggtt |
304 |
Q |
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| T |
2525071 |
tttcttataaataggtgatgattgtattgccctcaatggtggttcttcttacatcaatgttacccgtgttttttgtggacccggccatggaataaggtt |
2525169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 205 - 251
Target Start/End: Original strand, 32924773 - 32924819
Alignment:
| Q |
205 |
ttttcttttaaataggtgacgattgtattgccgtaaatggtggctcc |
251 |
Q |
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||||||| ||||||||||| |||||||||||| | |||||||||||| |
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| T |
32924773 |
ttttcttataaataggtgatgattgtattgccatcaatggtggctcc |
32924819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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