View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0811_high_30 (Length: 251)
Name: NF0811_high_30
Description: NF0811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0811_high_30 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 40844723 - 40844944
Alignment:
| Q |
30 |
acattatatgacaatgtaataataatacctttaggtttatatgaattccttcttttgctttgtttccttggtgaactctagatgcaaaagctggaatgta |
129 |
Q |
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| T |
40844723 |
acattatatgacaatgtaataataatacctttagatttatgtgaattccttcttttgctttgtttccttggtgaactctagatgcaaaagctggaatgta |
40844822 |
T |
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| Q |
130 |
atgtccagcgtatgactctccggtaatataaaaatcattctttgtgaactgagggtgttccttgaaaaatgcctgtccttgtaaaaatttaagttgatct |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40844823 |
atgtccagcgtatgactctccggtaatataaaaatcattctttgtgaactgagggtgttccttgaaaaatgcctgtcattgtaaaaatttaagttgatct |
40844922 |
T |
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| Q |
230 |
tatgtttgcacaacatcatagt |
251 |
Q |
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|||||||||||||||||||||| |
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| T |
40844923 |
tatgtttgcacaacatcatagt |
40844944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 30 - 211
Target Start/End: Original strand, 40850815 - 40850996
Alignment:
| Q |
30 |
acattatatgacaatgtaataataatacctttaggtttatatgaattccttcttttgctttgtttccttggtgaactctagatgcaaaagctggaatgta |
129 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40850815 |
acattatatgacaatgtaataataatacctttagatttatgtgaattccttcttttgctttgtttccttggtgaactctagatgcaaaagctggaatgta |
40850914 |
T |
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| Q |
130 |
atgtccagcgtatgactctccggtaatataaaaatcattctttgtgaactgagggtgttccttgaaaaatgcctgtccttgt |
211 |
Q |
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| T |
40850915 |
atgtccagcgtatgactctccggtaatataaaaatcattctttgtgaactgagggtgttccttgaaaaatgcctgtcattgt |
40850996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 40840350 - 40840568
Alignment:
| Q |
30 |
acattatatgacaatgtaataataatacctttaggtttatatgaattccttcttttgctttgtttccttggtgaactctagatgcaaaagctggaatgta |
129 |
Q |
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|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
40840350 |
acattatatgacaatgtaat---aatacctttagatttatatgaattccttcttttgctttgtttccttggtgaactctggatgcaaaagctggaacgta |
40840446 |
T |
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| Q |
130 |
atgtccagcgtatgactctccggtaatataaaaatcattctttgtgaactgagggtgttccttgaaaaatgcctgtccttgtaaaaatttaagttgatct |
229 |
Q |
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||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||| ||||||| |||| |||||||||||||| |||| || |
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| T |
40840447 |
atgtccagcgtatgactctccggtaatataaaagtcattctcagcgaactgagggtgttccttaaaaaatgtctgttattgtaaaaatttaaattgagct |
40840546 |
T |
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| Q |
230 |
tatgtttgcacaacatcatagt |
251 |
Q |
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|||||||||||||||||||||| |
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| T |
40840547 |
tatgtttgcacaacatcatagt |
40840568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 171
Target Start/End: Complemental strand, 21150328 - 21150213
Alignment:
| Q |
56 |
acctttaggtttatatgaattccttcttttgctttgtttccttggtgaactctagatgcaaaagctggaatgtaatgtccagcgtatgactctccggtaa |
155 |
Q |
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||||| ||||||||| |||||||||||| |||| |||||| || ||| || ||||||| ||||||| | |||||||||||||| ||||| |||| |
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| T |
21150328 |
accttgaggtttataataattccttctttatctttatttcctcggcgaattcgtgatgcaagagctggagcaaagtgtccagcgtatgattctccagtaa |
21150229 |
T |
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| Q |
156 |
tataaaaatcattctt |
171 |
Q |
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| T |
21150228 |
tataaaagtcgttctt |
21150213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 173
Target Start/End: Original strand, 19576123 - 19576231
Alignment:
| Q |
65 |
tttatatgaattccttcttttgctttgtttccttggtgaactctagatgcaaaagctggaatgtaatgtccagcgtatgactctccggtaatataaaaat |
164 |
Q |
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||||||||||||||||| || |||| ||||||||| || | | |||||| ||||| ||||| || || ||||| ||||| || || |||||| | || | |
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| T |
19576123 |
tttatatgaattccttcattagcttggtttccttgatggatgcgagatgctaaagcaggaatatagtgcccagcatatgattcacctgtaataaagaagt |
19576222 |
T |
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| Q |
165 |
cattctttg |
173 |
Q |
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||||||||| |
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| T |
19576223 |
cattctttg |
19576231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 144
Target Start/End: Complemental strand, 42337116 - 42337036
Alignment:
| Q |
64 |
gtttatatgaattccttcttttgctttgtttccttggtgaactctagatgcaaaagctggaatgtaatgtccagcgtatga |
144 |
Q |
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|||||||||||| |||||||| ||||||||||| | ||| || | || |||||||| ||||| |||||||| || ||||| |
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| T |
42337116 |
gtttatatgaatcccttctttagctttgtttcccttgtggacacgagcagcaaaagccggaatataatgtccggcatatga |
42337036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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