View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0811_high_5 (Length: 576)
Name: NF0811_high_5
Description: NF0811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0811_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 11 - 451
Target Start/End: Original strand, 6967250 - 6967691
Alignment:
| Q |
11 |
cacagatttgggcactataatttatg-aaatagtcattaatttgttctaattcagtttaaatgaattctacaaacttaactaaactcatggtcaccacat |
109 |
Q |
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| T |
6967250 |
cacagatttgggcactataatttatggaaatagtcattaatttgttctaaatcagtttaaatgaattctacaaacttaactaaactcatggtcaccacat |
6967349 |
T |
|
| Q |
110 |
tacatgacaatacaagtagtgtgacaagcaagcaactgtggctatgttgtcttttgcatgtggtcaaaagtccaacctgtttctgaaacagtgtactatg |
209 |
Q |
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| T |
6967350 |
tacatgacaatacaagtagtgtgacaagcaagcaactgtggctatgttgtcttttgcatgtggtcaaaagtccaacctgtttctggaacagtgtactatg |
6967449 |
T |
|
| Q |
210 |
aaaaagacatgcaattctgattcaagaatcaagatcaactatcaacatctcataatcatattttgtccttatacgtaacaaacacatgagaaacaaatgt |
309 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6967450 |
aaaaagacatgcaagtctgattcaagaatcaagatcaactatcaacatctcatgatcatattttgtccttatacgtaacaaacacatgagaaacaaatgt |
6967549 |
T |
|
| Q |
310 |
tcctagcctatatgtatacacaagaccaatagagtttaaacaaagaaacaaagtagtacaaagtagaagagnnnnnnnnnncatgtttgaaatttggggt |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6967550 |
tcctagcctatatgtatacacaagaccaatagagtttaaacaaagaaacaaagtagtacaaagtagaagagaaaaaaaaaacatgtttgaaatttggggt |
6967649 |
T |
|
| Q |
410 |
ctgataggttcaaaggttgcaagcctaatgtttatttgggct |
451 |
Q |
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| T |
6967650 |
ctgataggttcaaaggttgcaagcctaatgtttatttgggct |
6967691 |
T |
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