View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0811_high_6 (Length: 566)
Name: NF0811_high_6
Description: NF0811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0811_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 34 - 553
Target Start/End: Original strand, 5040262 - 5040780
Alignment:
| Q |
34 |
atgcacctgatcatttatcacaagaccagaaaacatcatcattaaggaaaattttaaacaagtcaagtcactgataattattaaccgaagaaagttacnn |
133 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5040262 |
atgcaccatatcatttatcacaagaccagaaaacatcatcattaaggaaaattttaaacaagtcaagtcactgataattattaaccgaagaaagttacaa |
5040361 |
T |
|
| Q |
134 |
nnnnnntatgataatcaaaacattaacaattagatatttcctgcaactttggctagaaaattaataaagatcagatacattaatcattgtctttgataac |
233 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5040362 |
aaaaaatatgataatcaaa-cattaacaattagatatttcctgcaactttggctagaaaattaataaagatcagatacattaatcattgtctttgataat |
5040460 |
T |
|
| Q |
234 |
aatgaaatgattagagatcatcatgaattcatgataataatcatgtcaaccctgtgaatgaggattgtgattactagggatcatttgcatgggaaaagaa |
333 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5040461 |
aatgaaatgattagagatcatcatgaattcatgataatattcatgtcaaccctgtgaatgaggattgtgattactagggatcatttgcatgggaaaagaa |
5040560 |
T |
|
| Q |
334 |
gggttaaaagagaaagcaatactagttggattacaatccatagcattaactttgttacctaaattttcaagtgccttaacctgtgaccttaaaaacttga |
433 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5040561 |
gggttaaaagagaaagcaatactagttggattacaatccatagcattaactttgttacctaaattttcaagtgccttaacctgtgaccttaaaaacttga |
5040660 |
T |
|
| Q |
434 |
gataatttgcagcttcatcaagcattgaagcagtgtccattttgcttccaccaggtacaatcttttgcaaaaccctaattctttcacctattctttccct |
533 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
5040661 |
gataatttgcagcttcatcaagcattgaagcagtgtccattttgcttccaccaggtacaatcttttgcaaaaccctaattctttcacttattctttctct |
5040760 |
T |
|
| Q |
534 |
tctatgtcttgcagcaacag |
553 |
Q |
| |
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|||||| ||||||||||||| |
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| T |
5040761 |
tctatgccttgcagcaacag |
5040780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 426 - 536
Target Start/End: Original strand, 43186976 - 43187086
Alignment:
| Q |
426 |
aaacttgagataatttgcagcttcatcaagcattgaagcagtgtccattttgcttccaccaggtacaatcttttgcaaaaccctaattctttcacctatt |
525 |
Q |
| |
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||||||||| ||||| |||||||||||||||||||| ||||||||||| ||| |||||||||| |||||||| ||||| || ||||| ||||||| |||| |
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| T |
43186976 |
aaacttgaggtaattagcagcttcatcaagcattgatgcagtgtccatcttggttccaccaggaacaatcttctgcaagactctaatcctttcacttatt |
43187075 |
T |
|
| Q |
526 |
ctttcccttct |
536 |
Q |
| |
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||||||||||| |
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|
| T |
43187076 |
ctttcccttct |
43187086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 445 - 545
Target Start/End: Complemental strand, 6259698 - 6259598
Alignment:
| Q |
445 |
gcttcatcaagcattgaagcagtgtccattttgcttccaccaggtac-aatcttttgcaaaaccctaattctttcacctattctttcccttctatgtctt |
543 |
Q |
| |
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|||||||| | ||| ||||||||||||||||| ||||||||||||| |||| |||| || | ||| |||||||||| |||||||| |||||||||||| |
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|
| T |
6259698 |
gcttcatctaacatagaagcagtgtccatttttgttccaccaggtactaatc-tttgtaatatccttattctttcactaattctttctcttctatgtctt |
6259600 |
T |
|
| Q |
544 |
gc |
545 |
Q |
| |
|
|| |
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|
| T |
6259599 |
gc |
6259598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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