View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0811_high_7 (Length: 501)
Name: NF0811_high_7
Description: NF0811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0811_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 99 - 491
Target Start/End: Complemental strand, 42982506 - 42982093
Alignment:
| Q |
99 |
caacaatcaatccagaaacagataactaaattcaaagcattcatgattggtttcaaagaccaaatgcatgcatagtttctaacaactaacaactcattat |
198 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42982506 |
caactatcaatccagaaacagataactaaattcaaagcattcatgattggtttcaaagaccaaatgcatgcatagtttctaacaactaacaactcattat |
42982407 |
T |
|
| Q |
199 |
tgtacaaacataaattattactcacatgtttatgtttatgtttataaataccatagttttatgtgtctcacttcctcacagttt---------------- |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42982406 |
tgtacaaacataaattattactcacatgtttatgtttatgtttataaataccatagttttatgtgtctcacttcctcacagttttagccttgttccttgt |
42982307 |
T |
|
| Q |
283 |
--ctctctatgctatgcaggcattagattagattgagttttagatcttttagtattgggatgtgtgttcctagatttggtctttgattctttttagcact |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42982306 |
ttctctctatgctatgcaggcattagattagattgagttttagatcttttagtattgggatgtgtgttcctagatttggtctttgattctttttagcact |
42982207 |
T |
|
| Q |
381 |
tcgataaattccattggttctctcattcattagtacattttttgttttatagaataataa---taatgggttattccatattctatattgttttatttgt |
477 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
42982206 |
tcgataaattccattggttctctcattcattagtacattttttgttttatagaataataataataatgggttattccatattctatattgttttgtttgt |
42982107 |
T |
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| Q |
478 |
gtccattttctgtg |
491 |
Q |
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|||||||||||||| |
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| T |
42982106 |
gtccattttctgtg |
42982093 |
T |
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