View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0811_high_9 (Length: 470)
Name: NF0811_high_9
Description: NF0811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0811_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 46873662 - 46874068
Alignment:
| Q |
1 |
ctatcttatcaggaagagttactgaggtaaattctccaaaatgttttccctttttatgtgatttgtggttgcttgaaatcacagacgtggcactagacat |
100 |
Q |
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| T |
46873662 |
ctatcttatcaggaagagttactgaggtaaattctccaaaatgttttccctttttatgtgatttgtggttgcttgaaatcacagacgcggcactagacat |
46873761 |
T |
|
| Q |
101 |
gacactatgcattgaatccaataatagtttgataaaatggactaattgaatgtatgtgttggtaacgtgtgtgtgtcttgcattagtcgcgcatcggaca |
200 |
Q |
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| T |
46873762 |
gacactatgcattgaatccaataatagtttgataaaatggactaattgaatgtatgtgttggtaatgtgtgtgtgtcttgcattagtcgcgcatcggaca |
46873861 |
T |
|
| Q |
201 |
taccttcgatctgaagtgtccatgatacgtatgttaatgttgactaactttatgttgttttgttgctgtttaatagtggaatggtggacaagttagctat |
300 |
Q |
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| T |
46873862 |
taccttcgatctgaagtgtccatgatacatatgctaatgttgactaactttatgttgttttgttgctgtttaatagtggaatggtggacaagttagctat |
46873961 |
T |
|
| Q |
301 |
gtgattcggaaggccaatacttcatggatacaaccaaaatggggtgcctcagtagtgcaattagaccctaatacttgggttcttgagtatcaaaggagct |
400 |
Q |
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| T |
46873962 |
gtgattcggaaggccaatacttcatggatacaaccaaaatggggtgcctcggtagtgcaattagaccctaatacttgggttcttgagtatcaaaggagct |
46874061 |
T |
|
| Q |
401 |
ctatgat |
407 |
Q |
| |
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| T |
46874062 |
ctatgat |
46874068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 118 - 154
Target Start/End: Complemental strand, 41345835 - 41345799
Alignment:
| Q |
118 |
ccaataatagtttgataaaatggactaattgaatgta |
154 |
Q |
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| T |
41345835 |
ccaataatagtttgagaaaattgactaattgaatgta |
41345799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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