View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0811_low_11 (Length: 495)
Name: NF0811_low_11
Description: NF0811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0811_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 438; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 28 - 485
Target Start/End: Complemental strand, 11849011 - 11848554
Alignment:
| Q |
28 |
caagtttaagaggataaccaaaaggttcaacagcagaaagcaaagcattaacaagtggactacatggttgaccaacaaccttagtacaaaagctattaat |
127 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11849011 |
caagtttaagaggataaccaaaaggttcaacaacagaaagcaaagcattaacaagtggactacatggttgaccaacaaccttagtacaaaagctattaat |
11848912 |
T |
|
| Q |
128 |
ccctttatccatatcattatcaaccttaacatcatctttaaacttaggaggtgacccttgaagacgattgttcgtcaaagccacagctttcaaactttga |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11848911 |
ccctttatccatatcattatcaaccttaacatcatctttaaacttaggaggtgacccttgaagacgattgttcgtcaaagccacagctttcaaactttga |
11848812 |
T |
|
| Q |
228 |
agcgaaattaaagactgcggaacaacaccggttaactgattatccctgaaactaacttcagacaattgatcatgatttgaaaaatctggtattggaccag |
327 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11848811 |
agcgaaattaaagactgcggaacaacaccggttaactgattatctctgaaactaacttcagacaattgatcatgatttgaaaaatctggtattggaccag |
11848712 |
T |
|
| Q |
328 |
taaaagcattaccttgaacccaaattactttcaacgatgtcatattttgcaaaacagaaagtgtaccattgagtttattaccattttgattattcaccca |
427 |
Q |
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|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11848711 |
taaaagcattactttgaacccaaattactttcaacgacgtcatattttgcaaaacagaaagtgtaccattgagtttattaccattttgattattcaccca |
11848612 |
T |
|
| Q |
428 |
aaggttctctatagaactaccagataaactattaggaaaattacctccaagagaatta |
485 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11848611 |
aaggttctctatagaactaccagataaactattaggcaaattacctccaagagaatta |
11848554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 28 - 484
Target Start/End: Complemental strand, 11835628 - 11835169
Alignment:
| Q |
28 |
caagtttaagaggataaccaaaaggttcaacagcagaaagcaaagcattaacaagtggactacatggttgaccaacaaccttagtacaaaagctattaat |
127 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| | |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11835628 |
caagttcaagaggataaccaaaaggttcaacaaccgaaagcaacgcattaacaaccggactacatggttgaccaacaaccttagtacaaaagctattaat |
11835529 |
T |
|
| Q |
128 |
ccctttatccatatcattatcaaccttaacatcatctttaaacttaggaggtgacccttgaagacgattgttcgtcaaagccacagctttcaaactttga |
227 |
Q |
| |
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|||| |||| |||||||||||||| |||| || || |||||| ||| ||||||||||||| |||||| |||||| ||| || | ||||||||| |
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| T |
11835528 |
ccctctatcaatatcattatcaacacgaacactattttgaaacttcggaactgacccttgaagataattgtttgtcaaattaacaactgttaaactttga |
11835429 |
T |
|
| Q |
228 |
agcgaaattaaagactgcggaacaacaccggttaactgattatccctgaaactaacttcagacaattgatcatgatttgaaaaatctggtattggaccag |
327 |
Q |
| |
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|||||| |||||||| | |||||||||||||||||||||||||| || |||||||| ||| |||||||||||||||| || ||||| ||||||||||||| |
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| T |
11835428 |
agcgaagttaaagacggtggaacaacaccggttaactgattatctctcaaactaacatcaaacaattgatcatgattcgataaatcaggtattggaccag |
11835329 |
T |
|
| Q |
328 |
taaaagcattaccttgaacccaaattactttcaacgatgtcatattttgcaaaacagaaagtgtaccattgagtttattacca---ttttgattattcac |
424 |
Q |
| |
|
|||| | |||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||| ||| || |
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| T |
11835328 |
taaacgaattaccatgaacccaaatttgtttcaacgatgtcatattttgcaaaacagaaagtgtgccattgagtttattattactcttttgaccatttac |
11835229 |
T |
|
| Q |
425 |
ccaaaggttctctatagaactaccagataaactattaggaaaattacctccaagagaatt |
484 |
Q |
| |
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|||||| ||| ||||||||||||||||||||||||||| ||||| ||| |||||||||| |
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| T |
11835228 |
ccaaagattcaatatagaactaccagataaactattaggcaaattcccttcaagagaatt |
11835169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 28 - 484
Target Start/End: Original strand, 11858136 - 11858595
Alignment:
| Q |
28 |
caagtttaagaggataaccaaaaggttcaacagcagaaagcaaagcattaacaagtggactacatggttgaccaacaaccttagtacaaaagctattaat |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||| | | |
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| T |
11858136 |
caagtttaagaggataaccaaaaggttcaacaacagaaagcaaagcattaacaagtggactacatggttgaccaatagccttagtgcaaaagctatgagt |
11858235 |
T |
|
| Q |
128 |
ccctttatccatatcattatcaaccttaacatcatctttaaacttaggaggtgacccttgaagacgattgttcgtcaaagccacagctttcaaactttga |
227 |
Q |
| |
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|||| |||| |||||||||||||| |||| || || |||||||||| |||||||||||||| |||||| |||||| ||| || | ||||||||| |
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| T |
11858236 |
ccctctatcaatatcattatcaacacgaacacgattttgaaacttaggaagtgacccttgaagataattgtttgtcaaattaacaactgttaaactttga |
11858335 |
T |
|
| Q |
228 |
agcgaaattaaagactgcggaacaacaccggttaactgattatccctgaaactaacttcagacaattgatcatgatttgaaaaatctggtattggaccag |
327 |
Q |
| |
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|||||| |||||||| | |||||||||||||||||||||||||| || |||||||| ||| ||||||||||||||||||| ||||| ||||| |||||| |
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| T |
11858336 |
agcgaagttaaagacggtggaacaacaccggttaactgattatctctcaaactaacatcaaacaattgatcatgatttgataaatcaggtatacgaccag |
11858435 |
T |
|
| Q |
328 |
taaaagcattaccttgaacccaaattactttcaacgatgtcatattttgcaaaacagaaagtgtaccattgagtttatta---ccattttgattattcac |
424 |
Q |
| |
|
|||| | |||||| || ||||||||| |||||| ||||||| ||||||||||||||||||||| ||||||||| ||||| | | ||||| ||| || |
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|
| T |
11858436 |
taaacgaattaccatgtacccaaatttgtttcaatgatgtcaaattttgcaaaacagaaagtgtgccattgagtctattaatactactttgaccatttac |
11858535 |
T |
|
| Q |
425 |
ccaaaggttctctatagaactaccagataaactattaggaaaattacctccaagagaatt |
484 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||||| ||||| |||| |
|
|
| T |
11858536 |
ccaaagtttctctatagaactaccagataaactattaggcaaattaccttcaagaaaatt |
11858595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 44797806 - 44797870
Alignment:
| Q |
33 |
ttaagaggataaccaaaaggttcaacagcagaaagcaaagcattaacaagtggactacatggttg |
97 |
Q |
| |
|
|||||||||||||| |||||||||||| | || |||||| ||| ||||| |||||||||||||| |
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|
| T |
44797806 |
ttaagaggataacccaaaggttcaacaactgatagcaaaatattcacaagaggactacatggttg |
44797870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 246 - 406
Target Start/End: Original strand, 44798019 - 44798179
Alignment:
| Q |
246 |
ggaacaacaccggttaactgattatccctgaaactaacttcagacaattgatcatgatttgaaaaatctggtattggaccagtaaaagcattaccttgaa |
345 |
Q |
| |
|
||||||||||| || ||||| |||||||| ||| | || ||||| | ||| | | | | ||| ||||| ||||| ||||| ||||| | |||| | | || |
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|
| T |
44798019 |
ggaacaacaccagtcaactggttatcccttaaattcacatcagatagttggttaagctgtgataaatcgggtataggacctgtaaatgaattatcgttaa |
44798118 |
T |
|
| Q |
346 |
cccaaattactttcaacgatgtcatattttgcaaaacagaaagtgtaccattgagtttatt |
406 |
Q |
| |
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|||| ||| |||||| |||||||| ||||| || ||| ||| ||||||||||||||||| |
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|
| T |
44798119 |
cccatatttgtttcaaagatgtcatgttttgtaacacaataagggtaccattgagtttatt |
44798179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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