View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0811_low_13 (Length: 459)

Name: NF0811_low_13
Description: NF0811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0811_low_13
NF0811_low_13
[»] chr2 (2 HSPs)
chr2 (30-432)||(32134987-32135389)
chr2 (30-436)||(22025123-22025529)
[»] chr5 (3 HSPs)
chr5 (30-436)||(20850662-20851068)
chr5 (66-430)||(26693858-26694222)
chr5 (66-430)||(26963590-26963954)
[»] chr6 (6 HSPs)
chr6 (156-307)||(18739852-18740004)
chr6 (30-94)||(18740006-18740070)
chr6 (30-94)||(18741243-18741307)
chr6 (62-266)||(21163367-21163571)
chr6 (66-208)||(22835387-22835529)
chr6 (354-459)||(22835136-22835241)
[»] scaffold0003 (1 HSPs)
scaffold0003 (66-316)||(216055-216305)


Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 30 - 432
Target Start/End: Complemental strand, 32135389 - 32134987
Alignment:
Q  30 gattcccggatagctttcagagatatgtgtcatttaaatactccttctttggtatttattgctgagcctatgatattgtatgattcaatccctagttggt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32135389 gattcccggatagctttcagagatatgtgtcatttaaatactccttctttggtatttattgttgagcctatgatattgtatgattcaatccctagttggt 32135290  T
Q  130 tttggaataatattcaggttactagttattgtgtgaatacaagggagcctcttattcctaatctttgggcggtgtggggatctgaagtgtctttcaatgt 229  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32135289 tttggaataatcttcaggttactaattattgtgtgaatacaagggagcctcttattcctaatctttgggcggtgtggggctctgaagtgtctttcaatgt 32135190  T
Q  230 tatttttacatcatctcaatgtttagtgctggaacatatttgcaagggcattaaaacttatattgctggaatttatgcaagcacatcgtacattttacgt 329  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  32135189 tatttttacatcatctcaatgtttagtgctggaacatgtttgcaagggcattaaaacttatcttgctggaatttatgccagcacatcgtacattttacgt 32135090  T
Q  330 cgacagttatggctggacttgactatgcttcaaaataattttgtggctccatggatctttgtgggggatttcaatgccgttttaggggctcatgagaaaa 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  32135089 cgacagttatggctggacttgactatgcttcaaaataattttgtggctccatggatctttgtgcgggatttcattgccgttttaggggctcatgagaaaa 32134990  T
Q  430 gag 432  Q
    |||    
T  32134989 gag 32134987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 30 - 436
Target Start/End: Complemental strand, 22025529 - 22025123
Alignment:
Q  30 gattcccggatagctttcagagatatgtgtcatttaaatactccttctttggtatttattgctgagcctatgatattgtatgattcaatccctagttggt 129  Q
    |||||||||||||| ||   |||  ||||||||||||||||||||||||| ||||||||| |||| |||||| | ||||||||||||||||| || | ||    
T  22025529 gattcccggatagcattttcagacttgtgtcatttaaatactccttctttagtatttattactgaacctatggtgttgtatgattcaatcccaagctagt 22025430  T
Q  130 tttggaataatattcaggttactagttattgtgtgaatacaagggagcctcttattcctaatctttgggcggtgtggggatctgaagtgtctttcaatgt 229  Q
    |||||||||||||||  ||||||| ||| ||||| |||| |||||| |||||||||||||| ||||||||| | |||||  | || |||  ||| | |||    
T  22025429 tttggaataatattcgagttactaattactgtgtcaataaaagggaccctcttattcctaacctttgggcgatttggggtccggatgtggtttttactgt 22025330  T
Q  230 tatttttacatcatctcaatgtttagtgctggaacatatttgcaagggcattaaaacttatattgctggaatttatgcaagcacatcgtacattttacgt 329  Q
     |||||| | |||||||| ||  | |||||||||||| ||| ||| |||| ||  || |||||||||||| ||||||| || ||||| || |||||||      
T  22025329 cattttttcttcatctcagtgcctggtgctggaacatgtttacaatggcactactacctatattgctggagtttatgcgagtacatcatatattttacac 22025230  T
Q  330 cgacagttatggctggacttgactatgcttcaaaataattttgtggctccatggatctttgtgggggatttcaatgccgttttaggggctcatgagaaaa 429  Q
     |||| ||||||   ||  | |||||| | |||||||||||| | ||||  ||||||||||| |||||||| ||||| ||| |||||||||||||||| |    
T  22025229 agacaattatgggctgatctaactatgttgcaaaataattttatagctcattggatctttgttggggattttaatgcggttctaggggctcatgagaaga 22025130  T
Q  430 gaggtcg 436  Q
    | |||||    
T  22025129 ggggtcg 22025123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 30 - 436
Target Start/End: Original strand, 20850662 - 20851068
Alignment:
Q  30 gattcccggatagctttcagagatatgtgtcatttaaatactccttctttggtatttattgctgagcctatgatattgtatgattcaatccctagttggt 129  Q
    |||||||||||||| ||   |||  ||||||||||||||||||||||||| |||||||||||||| |||||| | ||||||||||||||||| || | ||    
T  20850662 gattcccggatagcattttcagacttgtgtcatttaaatactccttctttagtatttattgctgaacctatggtgttgtatgattcaatcccaagcttgt 20850761  T
Q  130 tttggaataatattcaggttactagttattgtgtgaatacaagggagcctcttattcctaatctttgggcggtgtggggatctgaagtgtctttcaatgt 229  Q
    |||||||||||||||  ||||||| ||| ||||| ||||||||||| |||||||||||||| ||||||||| | |||||  | || |||  ||| | |||    
T  20850762 tttggaataatattcgagttactaattactgtgtcaatacaagggaccctcttattcctaacctttgggcgatttggggtccggatgtggtttttactgt 20850861  T
Q  230 tatttttacatcatctcaatgtttagtgctggaacatatttgcaagggcattaaaacttatattgctggaatttatgcaagcacatcgtacattttacgt 329  Q
     |||||| | |||||||| ||  | |||||||||||| ||| ||| |||| ||  || |||||||||||| ||||||| || ||||| ||  |||||||     
T  20850862 cattttttcttcatctcagtgcctggtgctggaacatgtttacaatggcactactacctatattgctggagtttatgcgagtacatcatatcttttacgc 20850961  T
Q  330 cgacagttatggctggacttgactatgcttcaaaataattttgtggctccatggatctttgtgggggatttcaatgccgttttaggggctcatgagaaaa 429  Q
     |||| ||||||   ||  | |||||| | |||||||||||| | ||||| ||||||||||| |||||||| ||||| ||| |||||||||||||||| |    
T  20850962 agacaattatgggctgatctaactatgttgcaaaataattttatagctccttggatctttgttggggattttaatgcggttctaggggctcatgagaaga 20851061  T
Q  430 gaggtcg 436  Q
    | |||||    
T  20851062 ggggtcg 20851068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 66 - 430
Target Start/End: Original strand, 26693858 - 26694222
Alignment:
Q  66 aatactccttctttggtatttattgctgagcctatgatattgtatgattcaatccctagttggttttggaataatattcaggttactagttattgtgtga 165  Q
    |||| |||| ||||| | ||||||||||| |||||| ||   |||||||| || |||||| |||||||||| | ||||||| | || | ||||||||| |    
T  26693858 aataatcctactttgatttttattgctgaacctatggtagcttatgattctattcctagtcggttttggaacactattcagatgacaaattattgtgtaa 26693957  T
Q  166 atacaagggagcctcttattcctaatctttgggcggtgtggggatctgaagtgtctttcaatgttatttttacatcatctcaatgtttagtgctggaaca 265  Q
    |   ||||||||| || |||||||||||||||||||||||||| || ||  |  | || | |||| | ||| |||| ||||||||||| || ||  ||||    
T  26693958 acgtaagggagccgctcattcctaatctttgggcggtgtggggttcggagatcacgtttactgttgtctttgcatcctctcaatgtttggtccttcaaca 26694057  T
Q  266 tatttgcaagggcattaaaacttatattgctggaatttatgcaagcacatcgtacattttacgtcgacagttatggctggacttgactatgcttcaaaat 365  Q
    | | ||||| || | ||  | ||||||||| ||| ||||||| |||||||| ||  |||| || || ||  | |||   ||  | || ||||| || |||    
T  26694058 tgtctgcaacgggactactatttatattgcaggagtttatgctagcacatcttatcttttgcgccgccaactttgggctgatctaacaatgctccagaat 26694157  T
Q  366 aattttgtggctccatggatctttgtgggggatttcaatgccgttttaggggctcatgagaaaag 430  Q
    ||||  || ||||| ||||| |||||||||||||| |||||||| || || ||||||||||||||    
T  26694158 aattacgtcgctccgtggatttttgtgggggattttaatgccgtcttgggtgctcatgagaaaag 26694222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 66 - 430
Target Start/End: Original strand, 26963590 - 26963954
Alignment:
Q  66 aatactccttctttggtatttattgctgagcctatgatattgtatgattcaatccctagttggttttggaataatattcaggttactagttattgtgtga 165  Q
    |||| |||| ||||| | ||||||||||| |||||| ||   |||||||| || |||||| |||||||||| | ||||||| | || | ||||||||| |    
T  26963590 aataatcctactttgatttttattgctgaacctatggtagcttatgattctattcctagtcggttttggaacactattcagatgacaaattattgtgtaa 26963689  T
Q  166 atacaagggagcctcttattcctaatctttgggcggtgtggggatctgaagtgtctttcaatgttatttttacatcatctcaatgtttagtgctggaaca 265  Q
    |   ||||||||| || |||||||||||||||||||||||||| || ||  |  | || | |||| | ||| |||| ||||||||||| || ||  ||||    
T  26963690 acgtaagggagccgctcattcctaatctttgggcggtgtggggttcggagatcacgtttactgttgtctttgcatcctctcaatgtttggtccttcaaca 26963789  T
Q  266 tatttgcaagggcattaaaacttatattgctggaatttatgcaagcacatcgtacattttacgtcgacagttatggctggacttgactatgcttcaaaat 365  Q
    | | ||||| || | ||  | ||||||||| ||| ||||||| |||||||| ||  |||| || || ||  | |||   ||  | || ||||| || |||    
T  26963790 tgtctgcaacgggactactatttatattgcaggagtttatgctagcacatcttatcttttgcgccgccaactttgggctgatctaacaatgctccagaat 26963889  T
Q  366 aattttgtggctccatggatctttgtgggggatttcaatgccgttttaggggctcatgagaaaag 430  Q
    ||||  || ||||| ||||| |||||||||||||| |||||||| || || ||||||||||||||    
T  26963890 aattacgtcgctccgtggatttttgtgggggattttaatgccgtcttgggtgctcatgagaaaag 26963954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 156 - 307
Target Start/End: Complemental strand, 18740004 - 18739852
Alignment:
Q  156 tattgtgtgaatacaagggagcctcttattcctaatctttgggcggtgtggggatctgaagtgtctttcaatgttatttttacatcatctcaatgtttag 255  Q
    ||||||||||||| |||||||||| | |||||||| ||||||||||| |||||  |||||||  |||| | |||||||||||| |||||||| ||||| |    
T  18740004 tattgtgtgaataaaagggagcctttcattcctaaactttgggcggtttggggtcctgaagttgcttttactgttatttttacgtcatctcagtgtttgg 18739905  T
Q  256 tgctggaacatatttgcaa-gggcattaaaacttatattgctggaatttatgc 307  Q
    ||||||||||| ||||||| ||||| |||||| |||||||||||| |||||||    
T  18739904 tgctggaacatgtttgcaatgggcactaaaacctatattgctggagtttatgc 18739852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 18740070 - 18740006
Alignment:
Q  30 gattcccggatagctttcagagatatgtgtcatttaaatactccttctttggtatttattgctga 94  Q
    |||||||||||||  || |||||||||||||||||||||||||| ||||| ||||||||||||||    
T  18740070 gattcccggatagaatttagagatatgtgtcatttaaatactccatctttagtatttattgctga 18740006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 18741307 - 18741243
Alignment:
Q  30 gattcccggatagctttcagagatatgtgtcatttaaatactccttctttggtatttattgctga 94  Q
    |||||||| ||||| || |||||||||||||||||||||||||| ||||| ||||||||||||||    
T  18741307 gattcccgaatagcatttagagatatgtgtcatttaaatactccatctttagtatttattgctga 18741243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 62 - 266
Target Start/End: Complemental strand, 21163571 - 21163367
Alignment:
Q  62 tttaaatactccttctttggtatttattgctgagcctatgatattgtatgattcaatccctagttggttttggaataatattcaggttactagttattgt 161  Q
    |||||||||||| |||||||| ||| ||||||| || ||  |  | | ||| || || |||| |||||||||||||||| |||||||||||| |||||||    
T  21163571 tttaaatactccatctttggtttttcttgctgaacccatagttgtttctgactccattcctacttggttttggaataatcttcaggttactaattattgt 21163472  T
Q  162 gtgaatacaagggagcctcttattcctaatctttgggcggtgtggggatctgaagtgtctttcaatgttatttttacatcatctcaatgtttagtgctgg 261  Q
     |||||  ||| ||||| || |||||||| |||||||  || |||||| | || ||  | || | | |||||||| | || ||||||||||| |||||||    
T  21163471 ttgaattaaagagagcccctcattcctaacctttgggttgtttggggagcggatgtcacatttactattatttttgcttcttctcaatgtttggtgctgg 21163372  T
Q  262 aacat 266  Q
    |||||    
T  21163371 aacat 21163367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 66 - 208
Target Start/End: Complemental strand, 22835529 - 22835387
Alignment:
Q  66 aatactccttctttggtatttattgctgagcctatgatattgtatgattcaatccctagttggttttggaataatattcaggttactagttattgtgtga 165  Q
    |||| |||| ||||| | ||||||||||| |||||| ||   |||||||| || |||||| |||||||||| | ||||||| | || | ||||||||| |    
T  22835529 aataatcctactttgatttttattgctgaacctatggtagcttatgattctattcctagtcggttttggaacactattcagatgacaaattattgtgtaa 22835430  T
Q  166 atacaagggagcctcttattcctaatctttgggcggtgtgggg 208  Q
    |   ||||||||| || |||||||||| |||||||||||||||    
T  22835429 acgtaagggagccgctcattcctaatccttgggcggtgtgggg 22835387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 354 - 459
Target Start/End: Complemental strand, 22835241 - 22835136
Alignment:
Q  354 atgcttcaaaataattttgtggctccatggatctttgtgggggatttcaatgccgttttaggggctcatgagaaaagaggtcgtaggctgccaccttctc 453  Q
    ||||| || |||||||  || ||||| ||||| |||||||||||||| |||||||| || || |||||||||||||| || ||| | || || || ||||    
T  22835241 atgctccagaataattacgtcgctccgtggatttttgtgggggattttaatgccgtcttgggtgctcatgagaaaaggggacgtcgtctccctccctctc 22835142  T
Q  454 tttctt 459  Q
    ||||||    
T  22835141 tttctt 22835136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 66 - 316
Target Start/End: Original strand, 216055 - 216305
Alignment:
Q  66 aatactccttctttggtatttattgctgagcctatgatattgtatgattcaatccctagttggttttggaataatattcaggttactagttattgtgtga 165  Q
    ||||| ||||| ||||| ||| ||||||| |||||| |  | ||||| || || ||||  ||||| ||||| ||| |||||||||||| ||| ||| |||    
T  216055 aatacaccttcattggtttttcttgctgaacctatggttgtatatgactctattcctacgtggttctggaacaatcttcaggttactaattactgtttga 216154  T
Q  166 atacaagggagcctcttattcctaatctttgggcggtgtggggatctgaagtgtctttcaatgttatttttacatcatctcaatgtttagtgctggaaca 265  Q
    ||| ||| ||||| || |||||||||||||||||||| |||||| | || || || || |||||||||||| | || ||||||||| | |||||||||||    
T  216155 ataaaagtgagcccctcattcctaatctttgggcggtttggggagcagaggtttcgtttaatgttatttttgcttcttctcaatgtctggtgctggaaca 216254  T
Q  266 tatttgcaagggcattaaaacttatattgctggaatttatgcaagcacatc 316  Q
    | | ||||| ||   ||| || || ||||||||||||||||| || |||||    
T  216255 tgtctgcaacggttctaagacatacattgctggaatttatgctagtacatc 216305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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