View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0811_low_16 (Length: 434)
Name: NF0811_low_16
Description: NF0811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0811_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 221 - 423
Target Start/End: Complemental strand, 21725061 - 21724859
Alignment:
| Q |
221 |
cagtttaagagagatgcctcaggttgagcaattgtttcactatgtacattgttgaataatcaccaattgatgctgaaaacaaacgaatcttcaagtatgc |
320 |
Q |
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| T |
21725061 |
cagtttaagagagatgcctcaggttgagcaattgtttcactatgtacattgttgaataatcaccaattgatgctgaaaacaaacaaatcttcaagtatgc |
21724962 |
T |
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| Q |
321 |
agttttaacaaataatttgattaaaaagagcttatgtttcaactttcttatttacctcattttggcatctgatcattgatctatggtttagatttatgtt |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21724961 |
agttttaacaaataatttgattaaaaagagcttatgtttcaactttcttatttacctcattttggcatctgatcattgatctatggtttagatttatgtt |
21724862 |
T |
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| Q |
421 |
cat |
423 |
Q |
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||| |
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| T |
21724861 |
cat |
21724859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 21725285 - 21725211
Alignment:
| Q |
1 |
tgtgcttattttggtttgttgtagtcgaattatgttgagtaatcaaagtagttgtcccaccgtagtggaaactaa |
75 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21725285 |
tgtgcttattttggtttgttgtagtcgaattatgttgagtaatcaaagtagttgtcccaccgtagtggaaactaa |
21725211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 21725144 - 21725088
Alignment:
| Q |
139 |
atattgtgtgagagtaagtttaattacatagatgatttcatgaaagctaactgctaa |
195 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
21725144 |
atattttgtgagagtaagtttaattacatagatgatttcatgaaagctaattgctaa |
21725088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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