View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0811_low_17 (Length: 420)
Name: NF0811_low_17
Description: NF0811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0811_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 14 - 383
Target Start/End: Original strand, 50640430 - 50640799
Alignment:
| Q |
14 |
agagtttaaaggaagataacaatcaatgtgcttaaagtttgcctcttccattttaaatcaaactaggtatcttgttcctgttgatacctgaatacaattt |
113 |
Q |
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| T |
50640430 |
agagtttaaaggaagataacaatcaatgtgcttaaagtttgcctcttccattttaaatcaaactaggtatcttgttcctgttgatacctgaatacaattt |
50640529 |
T |
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| Q |
114 |
ctttcacctatgatcaagatcaaagaatctataagcactcaccctcattctatattccagagaatcaggaaaaggggcctgtaatagaattgaaataatg |
213 |
Q |
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| T |
50640530 |
ctttcacctatgatcaagatcaaagaatctataagcactcaccctcattctatattccagagaatcaggaaaaggggcctgtaatagaattgaaataatg |
50640629 |
T |
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| Q |
214 |
ttatagggtttaaagaaaaaggtctctgattgcgatttgaactgcaacatcaacttttttaatatctctacgaccaccacgcaactgcaatcatcaagga |
313 |
Q |
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| T |
50640630 |
ttatagggtttaataaaaaaggtctctgatcgcgatttgaactgcaacatcaacttttttaatatctctacgaccaccacgcaactgcaatcatcaagga |
50640729 |
T |
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| Q |
314 |
ttgtgatgcaactggtatacctcaatttaaaccatcacctatacttagccaccagaaatctgatacagaa |
383 |
Q |
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| T |
50640730 |
ttgtgatgcaactggtatacctcaatttaaaccatcacctatacttagccaccagaaatctgatacagaa |
50640799 |
T |
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