View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0811_low_18 (Length: 418)

Name: NF0811_low_18
Description: NF0811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0811_low_18
NF0811_low_18
[»] chr3 (11 HSPs)
chr3 (25-399)||(1717455-1717829)
chr3 (187-399)||(1738952-1739164)
chr3 (223-399)||(1754123-1754300)
chr3 (274-399)||(1748807-1748932)
chr3 (26-107)||(46893416-46893497)
chr3 (26-80)||(13639459-13639513)
chr3 (26-107)||(29235677-29235758)
chr3 (26-94)||(48543213-48543281)
chr3 (24-107)||(54186997-54187080)
chr3 (26-95)||(20909363-20909432)
chr3 (26-58)||(54140812-54140844)
[»] chr8 (6 HSPs)
chr8 (25-107)||(30085447-30085529)
chr8 (26-107)||(33440574-33440655)
chr8 (26-107)||(28700583-28700664)
chr8 (26-104)||(6580862-6580939)
chr8 (28-78)||(31703822-31703872)
chr8 (43-107)||(16895271-16895335)
[»] chr4 (5 HSPs)
chr4 (25-110)||(51475233-51475318)
chr4 (26-94)||(31699549-31699617)
chr4 (26-90)||(37306476-37306540)
chr4 (25-102)||(6540258-6540335)
chr4 (26-80)||(43480299-43480353)
[»] scaffold0922 (1 HSPs)
scaffold0922 (26-93)||(709-776)
[»] chr5 (6 HSPs)
chr5 (26-110)||(41020248-41020332)
chr5 (26-88)||(42958487-42958549)
chr5 (26-94)||(5990589-5990657)
chr5 (26-94)||(18237206-18237274)
chr5 (26-94)||(30892150-30892218)
chr5 (26-94)||(32153763-32153831)
[»] chr1 (5 HSPs)
chr1 (26-81)||(932035-932090)
chr1 (34-107)||(11709656-11709729)
chr1 (26-107)||(19078941-19079022)
chr1 (26-107)||(19126829-19126910)
chr1 (28-94)||(14562603-14562669)
[»] chr7 (4 HSPs)
chr7 (25-107)||(17878710-17878792)
chr7 (26-94)||(557447-557515)
chr7 (25-81)||(47822035-47822091)
chr7 (26-107)||(43930030-43930110)
[»] chr2 (5 HSPs)
chr2 (28-94)||(5140042-5140108)
chr2 (34-110)||(864178-864254)
chr2 (26-94)||(6951739-6951808)
chr2 (25-105)||(16012002-16012082)
chr2 (26-94)||(37285185-37285253)
[»] chr6 (2 HSPs)
chr6 (26-107)||(7447636-7447716)
chr6 (27-107)||(32439506-32439586)


Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 25 - 399
Target Start/End: Complemental strand, 1717829 - 1717455
Alignment:
Q  25 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagagtgtacatggcattcctc 124  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||| ||||||| ||||| |||    
T  1717829 atctcaccactttatgtatgatccatttccaatatttgatatccacatgaatttcactaaataagaaagtggacgttagagaatgtacatagcatttctc 1717730  T
Q  125 cttagacagaatgctaggaacactcttactagaactttctctaagattcactctccttatttaaaactttgttaaccaattgaattacctactcgaagct 224  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  1717729 cttagacagaatgctaggaacactcttactggcactttctctaagattcactctccttatttaaaactttgttaaccaaatgaattacctactcgaaact 1717630  T
Q  225 gatttctttatacatgaattgaacttgtttacagatacagtcatagaaaaagtttaggaggaatagagctgatgaataagccactaggtgtcaatctaga 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  1717629 gatttctttatacatgaattgaacttgtttacagatacagtcatagaaaaagtttaggaggaatagagctgatgaatgagccactaggtgtcaatctaga 1717530  T
Q  325 tagcctgaagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaatacttatgtgatgatgtc 399  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1717529 tagcttgaagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaatacttatgtgatcatgtc 1717455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 187 - 399
Target Start/End: Complemental strand, 1739164 - 1738952
Alignment:
Q  187 aaaactttgttaaccaattgaattacctactcgaagctgatttctttatacatgaattgaacttgtttacagatacagtcatagaaaaagtttaggagga 286  Q
    ||||||| ||| ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||    
T  1739164 aaaacttagttcaccaaatgaattacctactcgaaactgatatctttatacatgaattgaacttgtttacagatataataatagaaaaagtttaggagga 1739065  T
Q  287 atagagctgatgaataagccactaggtgtcaatctagatagcctgaagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaatactt 386  Q
    ||||||||||||||| ||||||| |||||||||| ||||||||| ||||||||||||| |  ||||||||||||||||||||||||||||||||||||||    
T  1739064 atagagctgatgaatgagccacttggtgtcaatcaagatagcctcaagaactattacaagttagcttatgatgttgtgaggaaatacatcccaaatactt 1738965  T
Q  387 atgtgatgatgtc 399  Q
    ||||||| |||||    
T  1738964 atgtgatcatgtc 1738952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 223 - 399
Target Start/End: Complemental strand, 1754300 - 1754123
Alignment:
Q  223 ctgatttcttt-atacatgaattgaacttgtttacagatacagtcatagaaaaagtttaggaggaatagagctgatgaataagccactaggtgtcaatct 321  Q
    ||||||||||| |||| ||||||||| ||||  |||| ||  || |||||  ||||||||||||||||||| |||||||| |||||| ||||||||||||    
T  1754300 ctgatttctttgatacttgaattgaatttgtggacaggtatggtaatagaccaagtttaggaggaatagagttgatgaatgagccacaaggtgtcaatct 1754201  T
Q  322 agatagcctgaagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaatacttatgtgatgatgtc 399  Q
    ||||||||| ||||| ||||||| ||| ||||||||||  |||||||||||||  |||||| |||||||||| |||||    
T  1754200 agatagcctcaagaaatattacaaggaggcttatgatgcagtgaggaaatacaatccaaatgcttatgtgataatgtc 1754123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 274 - 399
Target Start/End: Complemental strand, 1748932 - 1748807
Alignment:
Q  274 aagtttaggaggaatagagctgatgaataagccactaggtgtcaatctagatagcctgaagaactattacagggaagcttatgatgttgtgaggaaatac 373  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||| ||||| || ||||| ||||||| || ||||||||||| |||||| ||||||    
T  1748932 aagtttaggaggaatagagctgatgaatgagccacaaggtgtcaatcttgatagtctcaagaagtattacaaggcagcttatgatgctgtgagaaaatac 1748833  T
Q  374 atcccaaatacttatgtgatgatgtc 399  Q
    | |||| |  |||||||||| |||||    
T  1748832 aacccagaggcttatgtgatcatgtc 1748807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 107
Target Start/End: Original strand, 46893416 - 46893497
Alignment:
Q  26 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 107  Q
    ||||||||||||||||| |||||||||||||| | || || |||||||||||||| | |||||||||||   ||||||||||    
T  46893416 tctcaccactttatgtgggatccatttccaatgtgtgttacccacatgaatttcatttaataagagagtgagtgttagagag 46893497  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 13639513 - 13639459
Alignment:
Q  26 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttca 80  Q
    ||||||||||||||||| |||||||||||||| | ||||| ||||||||||||||    
T  13639513 tctcaccactttatgtgagatccatttccaatgtgtgatacccacatgaatttca 13639459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 107
Target Start/End: Complemental strand, 29235758 - 29235677
Alignment:
Q  26 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 107  Q
    ||||||||||||||||  |||||||||| ||| | || ||||| ||||||||||||  |||||||||||   ||||||||||    
T  29235758 tctcaccactttatgttggatccatttctaatgtgtggtatcctcatgaatttcacccaataagagagtgagtgttagagag 29235677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 48543213 - 48543281
Alignment:
Q  26 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 94  Q
    |||||||| |||||||| | |||||||||||| | || || |||||||||||||||  |||||||||||    
T  48543213 tctcaccattttatgtggggtccatttccaatgtatgctacccacatgaatttcacccaataagagagt 48543281  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 107
Target Start/End: Original strand, 54186997 - 54187080
Alignment:
Q  24 aatctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 107  Q
    |||||||||| |||||||| |||||||||| ||| | || || ||||||||| |||||  |||||||||||   ||||||||||    
T  54186997 aatctcaccattttatgtgggatccatttctaatgtgtggtacccacatgaacttcacccaataagagagtgagtgttagagag 54187080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 20909363 - 20909432
Alignment:
Q  26 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagta 95  Q
    ||||||||||||||||| ||||||||| |||||  || |  |||| ||||||||||  ||||||||||||    
T  20909363 tctcaccactttatgtgggatccattttcaataggtggtgcccacctgaatttcacccaataagagagta 20909432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 54140844 - 54140812
Alignment:
Q  26 tctcaccactttatgtgtgatccatttccaata 58  Q
    ||||||||||||||||| |||||||||||||||    
T  54140844 tctcaccactttatgtgggatccatttccaata 54140812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 107
Target Start/End: Original strand, 30085447 - 30085529
Alignment:
Q  25 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 107  Q
    |||||||||||||||||| ||||||||||||| || ||| |  ||||||||||||||| ||||||||||||  ||||||||||    
T  30085447 atctcaccactttatgtgggatccatttccaacatgtgacactcacatgaatttcactcaataagagagtaagtgttagagag 30085529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 107
Target Start/End: Original strand, 33440574 - 33440655
Alignment:
Q  26 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 107  Q
    ||||||||||||||||| |||||||||||||| | || || |||||||| ||||||  |||||||||||  |||||||||||    
T  33440574 tctcaccactttatgtgggatccatttccaatgtgtggtacccacatgactttcacccaataagagagtgaatgttagagag 33440655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 107
Target Start/End: Complemental strand, 28700664 - 28700583
Alignment:
Q  26 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 107  Q
    ||||||||||||||||| ||| |||||||||||| || || |||||| ||||| ||  |||||||||||   ||||||||||    
T  28700664 tctcaccactttatgtgggattcatttccaatatgtggtacccacataaatttaacccaataagagagtgagtgttagagag 28700583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 6580939 - 6580862
Alignment:
Q  26 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttaga 104  Q
    ||||||||||||||||| |||| ||||||||| | || || |||||||||||||||  |||||||| ||  ||||||||    
T  6580939 tctcaccactttatgtgggatc-atttccaatgtgtggtacccacatgaatttcacccaataagagggtgaatgttaga 6580862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 31703822 - 31703872
Alignment:
Q  28 tcaccactttatgtgtgatccatttccaatatttgatatccacatgaattt 78  Q
    ||||||||||||||| |||||||||||||  | |||||||||||| |||||    
T  31703822 tcaccactttatgtgggatccatttccaaagtgtgatatccacattaattt 31703872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 16895335 - 16895271
Alignment:
Q  43 tgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 107  Q
    |||||||||| |||||| || ||||||||||||||| | | |||||||||||   ||||||||||    
T  16895335 tgatccattttcaatatgtggtatccacatgaatttgattcaataagagagtgagtgttagagag 16895271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 51475233 - 51475318
Alignment:
Q  25 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagagtgt 110  Q
    |||||||||||||||||| |||||||||||||| | || || ||||||| |||||||  ||||||||||| | |||||||||||||    
T  51475233 atctcaccactttatgtgggatccatttccaatgtgtggtacccacatggatttcacccaataagagagtgggtgttagagagtgt 51475318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 31699549 - 31699617
Alignment:
Q  26 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 94  Q
    |||||||| |||||||| | |||||||||||| | ||||| |||||||||||||||  |||||||||||    
T  31699549 tctcaccattttatgtggggtccatttccaatgtatgatacccacatgaatttcacccaataagagagt 31699617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 37306476 - 37306540
Alignment:
Q  26 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataaga 90  Q
    ||||||||||||||||| |||||||||||||| | || || |||||||||||||||  |||||||    
T  37306476 tctcaccactttatgtgagatccatttccaatgtgtggtacccacatgaatttcacccaataaga 37306540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 6540335 - 6540258
Alignment:
Q  25 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgtta 102  Q
    ||||||||||||| |||  |||||||||||||| | ||||| ||||||  |||||||  ||||||||||| |||||||    
T  6540335 atctcaccactttgtgtaggatccatttccaatgtatgataaccacattgatttcacccaataagagagtggatgtta 6540258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 43480353 - 43480299
Alignment:
Q  26 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttca 80  Q
    ||||||||||||||||| ||||||||| |||| | || || ||||||||||||||    
T  43480353 tctcaccactttatgtgggatccattttcaatgtgtggtacccacatgaatttca 43480299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 776 - 709
Alignment:
Q  26 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagag 93  Q
    ||||||||||||||||| ||||||||| |||| | || ||||||||||||||||||| ||||||||||    
T  776 tctcaccactttatgtgggatccattttcaatgtgtggtatccacatgaatttcactcaataagagag 709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 41020248 - 41020332
Alignment:
Q  26 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagagtgt 110  Q
    ||||||||||||||||| ||| |||||||||||| || || ||||||  |||||||  ||||||||||| | |||||||||||||    
T  41020248 tctcaccactttatgtgggattcatttccaatatgtggtacccacatatatttcacccaataagagagtgggtgttagagagtgt 41020332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 42958549 - 42958487
Alignment:
Q  26 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataa 88  Q
    ||||||||||||||||| ||||||||||||||   || || ||||||||||||||| ||||||    
T  42958549 tctcaccactttatgtgggatccatttccaatgcgtggtacccacatgaatttcaccaaataa 42958487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 5990589 - 5990657
Alignment:
Q  26 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 94  Q
    |||||||| |||||||| |||||||||||||| | || || |||||||||||||||  ||||| |||||    
T  5990589 tctcaccattttatgtgggatccatttccaatgtatggtacccacatgaatttcacccaataaaagagt 5990657  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 18237206 - 18237274
Alignment:
Q  26 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 94  Q
    ||||||||||||||||| |||| |||| |||| | ||||| |||||||||||||||  ||||| |||||    
T  18237206 tctcaccactttatgtgggatctattttcaatgtgtgatacccacatgaatttcacccaataaaagagt 18237274  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 30892218 - 30892150
Alignment:
Q  26 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 94  Q
    |||||||| |||||||| |||||||||| ||| | || || ||||||||| |||||  |||||||||||    
T  30892218 tctcaccattttatgtgggatccatttctaatgtgtggtacccacatgaacttcaccgaataagagagt 30892150  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 32153763 - 32153831
Alignment:
Q  26 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 94  Q
    ||||||||||||||||| |||||||||||||  | ||  |||||||||  ||||||  |||||||||||    
T  32153763 tctcaccactttatgtgggatccatttccaaagtgtgggatccacatgggtttcacccaataagagagt 32153831  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 932090 - 932035
Alignment:
Q  26 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcac 81  Q
    ||||||||||||||||| |||||||||||||| | || ||||||||||||||||||    
T  932090 tctcaccactttatgtgggatccatttccaatgtgtggtatccacatgaatttcac 932035  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 107
Target Start/End: Original strand, 11709656 - 11709729
Alignment:
Q  34 ctttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 107  Q
    ||||||||| |||||||||||||| | || || |||||||||||||||| |||||||||||   ||||||||||    
T  11709656 ctttatgtgggatccatttccaatgtgtggtacccacatgaatttcactcaataagagagtgagtgttagagag 11709729  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 107
Target Start/End: Complemental strand, 19079022 - 19078941
Alignment:
Q  26 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 107  Q
    ||||||||||||||||| |||||||||||||| | || || || ||||| ||||||  |||||||||||   ||||||||||    
T  19079022 tctcaccactttatgtgggatccatttccaatgtgtggtacccgcatgactttcacccaataagagagtgagtgttagagag 19078941  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 107
Target Start/End: Complemental strand, 19126910 - 19126829
Alignment:
Q  26 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 107  Q
    ||||||||||||||||| |||||||||||||| | || || || ||||| ||||||  |||||||||||   ||||||||||    
T  19126910 tctcaccactttatgtgggatccatttccaatgtgtggtacccgcatgactttcacccaataagagagtgagtgttagagag 19126829  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 14562603 - 14562669
Alignment:
Q  28 tcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 94  Q
    ||||||||||||||| |||||||||||||  | || || | |||| ||||||||| |||||||||||    
T  14562603 tcaccactttatgtgggatccatttccaaagtgtggtacctacataaatttcactcaataagagagt 14562669  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 25 - 107
Target Start/End: Complemental strand, 17878792 - 17878710
Alignment:
Q  25 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 107  Q
    |||||||||||||||||| |||| ||||| ||| | ||||| |||||||| ||||||  |||||||||||| |||||| ||||    
T  17878792 atctcaccactttatgtgggatctatttctaatgtgtgatacccacatgactttcacccaataagagagtaaatgttaaagag 17878710  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 557447 - 557515
Alignment:
Q  26 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 94  Q
    ||||||||||||||||| |||||||||  ||| | ||||| ||||||||||||||   |||||||||||    
T  557447 tctcaccactttatgtgggatccatttttaatgtgtgatacccacatgaatttcatccaataagagagt 557515  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 47822091 - 47822035
Alignment:
Q  25 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcac 81  Q
    |||||||||||||||||| |||||||||||||| | || || ||||||| |||||||    
T  47822091 atctcaccactttatgtgggatccatttccaatgtgtggtacccacatggatttcac 47822035  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 107
Target Start/End: Original strand, 43930030 - 43930110
Alignment:
Q  26 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 107  Q
    |||||||||||||| |||||||||||| |||| | || || |||||||||||||||  ||||| |||||   ||||||||||    
T  43930030 tctcaccactttat-tgtgatccattttcaatgtgtggtacccacatgaatttcacccaataaaagagtgagtgttagagag 43930110  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 5140042 - 5140108
Alignment:
Q  28 tcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 94  Q
    ||||||||||||||| ||||||||| |||| | || || |||||||||||||||| |||||||||||    
T  5140042 tcaccactttatgtgggatccattttcaatgtgtggtacccacatgaatttcactcaataagagagt 5140108  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 864178 - 864254
Alignment:
Q  34 ctttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagagtgt 110  Q
    ||||||||| |||||||||| ||| | || || |||||||||||||||  |||||||||||   |||||||||||||    
T  864178 ctttatgtgggatccatttctaatgtgtggtacccacatgaatttcacccaataagagagtgagtgttagagagtgt 864254  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 6951808 - 6951739
Alignment:
Q  26 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaa-tttcactaaataagagagt 94  Q
    ||||||||||||||||| ||||||||| |||| | ||  | ||||||||| ||||||| |||||||||||    
T  6951808 tctcaccactttatgtgggatccattttcaatgtgtggcacccacatgaattttcactcaataagagagt 6951739  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 16012002 - 16012082
Alignment:
Q  25 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagag 105  Q
    ||||||||||||||||| | ||| |||||||| || |  |||||||||| |||| | | ||||||| ||||| ||||||||    
T  16012002 atctcaccactttatgtttaatctatttccaaaatgtagtatccacatgtattttattcaataagaaagtaggtgttagag 16012082  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 37285185 - 37285253
Alignment:
Q  26 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 94  Q
    ||||| ||||||| ||| |||||||||||||| | || || |||||||||||||||  ||||| |||||    
T  37285185 tctcatcactttacgtgagatccatttccaatgtgtggtacccacatgaatttcacccaataaaagagt 37285253  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 107
Target Start/End: Original strand, 7447636 - 7447716
Alignment:
Q  26 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 107  Q
    ||||||||||||||||| |||||||||| ||| | || || |||||||||||||||  || |||||||| ||||||||||||    
T  7447636 tctcaccactttatgtgggatccatttctaatgtgtggtacccacatgaatttcacccaacaagagagt-gatgttagagag 7447716  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 32439586 - 32439506
Alignment:
Q  27 ctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 107  Q
    |||||| ||||||||| |||||||||||||| | || || |||||||||||||||  |||||||||||   ||||||||||    
T  32439586 ctcaccgctttatgtgggatccatttccaatgtgtggtacccacatgaatttcacccaataagagagtgagtgttagagag 32439506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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