View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0811_low_19 (Length: 416)
Name: NF0811_low_19
Description: NF0811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0811_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 77 - 403
Target Start/End: Original strand, 53901639 - 53901965
Alignment:
| Q |
77 |
aacatgctattcttacccttcaaatcatcattaccactaccaacattgctttgtaatggaaacctaaatgaaacagctcttctagatgaatcagttacat |
176 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53901639 |
aacatgccattcttacccttcaaatcatcattaccactaccaacattgctttgtaatggaaacctaaatgaaacagctcttctagatgaatcagttacat |
53901738 |
T |
|
| Q |
177 |
caccatttttcttatcnnnnnnncctctaagccaaatctttgatatagaaaaactctcctttctactccttccaataccagcaccctcactagtactacc |
276 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53901739 |
caccatttttcttatctttttttcctctaagccaaatctttgatatagaaaaactctcctttctactccttccaataccagcaccctcactagtactacc |
53901838 |
T |
|
| Q |
277 |
tttaacaacatcctcagctctggctgaatcaaagcttgcaaatttgaaatctcttctagattcacaatcacattctgacattgcaatcctatgacctgga |
376 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53901839 |
tttaacaacatcctcagctctggctgaatcaaagcttgcaaatttgaaatctcttctagattcacaatcacattctgacattgcaatcctatgacctgga |
53901938 |
T |
|
| Q |
377 |
atcaaaggtaaaacattcttcttcttc |
403 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
53901939 |
atcaaaggtaaaacattcttcttcttc |
53901965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 77 - 403
Target Start/End: Complemental strand, 3958844 - 3958518
Alignment:
| Q |
77 |
aacatgctattcttacccttcaaatcatcattaccactaccaacattgctttgtaatggaaacctaaatgaaacagctcttctagatgaatcagttacat |
176 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||| |
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|
| T |
3958844 |
aacatgccattcttacccttcaaatcatcattaccactaccaacattgctttgtaatggaaacctgaatgaaacagcccttctagatgaatcagccacat |
3958745 |
T |
|
| Q |
177 |
caccatttttcttatcnnnnnnncctctaagccaaatctttgatatagaaaaactctcctttctactccttccaataccagcaccctcactagtactacc |
276 |
Q |
| |
|
|||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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|
| T |
3958744 |
caccatttttcttatcttttttccctctgagcctaatctttgatatagaaaaactctcctttcttctccttccaataccagcaccctcactagtaatacc |
3958645 |
T |
|
| Q |
277 |
tttaacaacatcctcagctctggctgaatcaaagcttgcaaatttgaaatctcttctagattcacaatcacattctgacattgcaatcctatgacctgga |
376 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
3958644 |
tttaacaacatcctcagctctagctgaataaaagcttgcaaatttgaaatctcttctagattcacaatcacattctgacattgcaatcctgtgacctgga |
3958545 |
T |
|
| Q |
377 |
atcaaaggtaaaacattcttcttcttc |
403 |
Q |
| |
|
|||||||| |||||||||||||||||| |
|
|
| T |
3958544 |
atcaaaggcaaaacattcttcttcttc |
3958518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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