View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0811_low_20 (Length: 409)
Name: NF0811_low_20
Description: NF0811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0811_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 10 - 381
Target Start/End: Complemental strand, 27698282 - 27697911
Alignment:
| Q |
10 |
gcagagaaagcaaaaacacagttaagtaatacgaaagcagcatcaacatgttcaacttcctcaagaccaggccctccatccttcataccttttccaaagt |
109 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27698282 |
gcagagaaagcaaaaacacagttaagcattacgaaagcagcatcaacatgttcaacttcctcaagaccaggccctccatccttcataccttttccaaagt |
27698183 |
T |
|
| Q |
110 |
accttgtgttaaaaaacaatttcctatacacattaccacaataatgttgagtagcaatccttacattcaccaggccaccattgttgcatttgttgtacac |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27698182 |
accttgtgttaaaaaacaatttcctatacacattaccacaataatgttgagtagcaatccttacattcaccaggccaccattgttgcatttgttgtacac |
27698083 |
T |
|
| Q |
210 |
gtaaaacataagattgtcggcttcttcgttccttttatcttgaagccattgatgccttcgtgaagagaacaaatctttaacaagaactttcttcatcttt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27698082 |
gtaaaacataagattgtcggcttcttcgttccttttatcttgaagccattgatgccttcgtgaagagaacaaatctttaacaagaactttcttcatcttt |
27697983 |
T |
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| Q |
310 |
ttccattgttcgccatagggtacaagaattgaggtcacgtagccattggaaatgatatcactagccatggtt |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27697982 |
ttccattgttcgccatagggtacaagaattgaggtcacgtagccattggaaatgatatcactagccatggtt |
27697911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 10 - 378
Target Start/End: Original strand, 27713831 - 27714199
Alignment:
| Q |
10 |
gcagagaaagcaaaaacacagttaagtaatacgaaagcagcatcaacatgttcaacttcctcaagaccaggccctccatccttcataccttttccaaagt |
109 |
Q |
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| T |
27713831 |
gcagagaaagcataaacatggttaagcaatgtgaaaacagcatcaacatgttcaatttcctcaagacctggccctccatcctccataccttttccaaagt |
27713930 |
T |
|
| Q |
110 |
accttgtgttaaaaaacaatttcctatacacattaccacaataatgttgagtagcaatccttacattcaccaggccaccattgttgcatttgttgtacac |
209 |
Q |
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||||||| |||||||||| ||||||| |||||||||||||| ||||||| || |||||||| |||||||| ||||||||||||||||||||||| ||||| |
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| T |
27713931 |
accttgtattaaaaaacagtttcctaaacacattaccacaaaaatgttgtgttgcaatcctaacattcacaaggccaccattgttgcatttgttatacac |
27714030 |
T |
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| Q |
210 |
gtaaaacataagattgtcggcttcttcgttccttttatcttgaagccattgatgccttcgtgaagagaacaaatctttaacaagaactttcttcatcttt |
309 |
Q |
| |
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||||| |||||||| |||||||||||||||||||| | |||||||||||||||||| |||| ||||| ||||| ||| ||| || |||||||||||| |
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| T |
27714031 |
ataaaatataagattatcggcttcttcgttccttttgtgttgaagccattgatgcctgcgtggagagagcaaattgttagcaacgacgttcttcatcttt |
27714130 |
T |
|
| Q |
310 |
ttccattgttcgccatagggtacaagaattgaggtcacgtagccattggaaatgatatcactagccatg |
378 |
Q |
| |
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||||| ||||||||| ||||||||| || |||||||| ||| |||||||| ||||||||||| |||||| |
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| T |
27714131 |
ttccactgttcgccaaagggtacaaaaactgaggtcaagtatccattggagatgatatcactggccatg |
27714199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 43 - 382
Target Start/End: Complemental strand, 26409238 - 26408899
Alignment:
| Q |
43 |
aaagcagcatcaacatgttcaacttcctcaagaccaggccctccatccttcataccttttccaaagtaccttgtgttaaaaaacaatttcctatacacat |
142 |
Q |
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||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||| |||||||||||||| |
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| T |
26409238 |
aaagcagcatcaacatgctcaatttcctcaagaccaggccctccatccttcataccctttccaaagtaccttgtattaaaatacattttcctatacacat |
26409139 |
T |
|
| Q |
143 |
taccacaataatgttgagtagcaatccttacattcaccaggccaccattgttgcatttgttgtacacgtaaaacataagattgtcggcttcttcgttcct |
242 |
Q |
| |
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|||| ||||||||||| | ||||| || ||| |||| || |||||||||||||||||||||| || ||||| |||||||| ||||||||||||||||| |
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| T |
26409138 |
taccgcaataatgttgtgaagcaagtctaacactcacaagatcaccattgttgcatttgttgtatacataaaagataagattatcggcttcttcgttcct |
26409039 |
T |
|
| Q |
243 |
tttatcttgaagccattgatgccttcgtgaagagaacaaatctttaacaagaactttcttcatctttttccattgttcgccatagggtacaagaattgag |
342 |
Q |
| |
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||| |||||||||||| ||| ||| ||| ||| |||||||| ||||||| | |||||||||||||||||||||||||||| ||||| ||| | ||| |
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| T |
26409038 |
tttgtcttgaagccatcgatatctttgtggagacaacaaatcgttaacaatgattttcttcatctttttccattgttcgccaaagggtgcaatagcagag |
26408939 |
T |
|
| Q |
343 |
gtcacgtagccattggaaatgatatcactagccatggttg |
382 |
Q |
| |
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|||| ||||||| |||| || ||| |||| |||||||||| |
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| T |
26408938 |
gtcaagtagccactggagattataccactggccatggttg |
26408899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 48 - 155
Target Start/End: Original strand, 27746697 - 27746804
Alignment:
| Q |
48 |
agcatcaacatgttcaacttcctcaagaccaggccctccatccttcataccttttccaaagtaccttgtgttaaaaaacaatttcctatacacattacca |
147 |
Q |
| |
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|||||| ||||||||||||||||| | |||||| |||||||| || | |||| ||||||||||||||| ||||||| ||||||||| || ||||| | |
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| T |
27746697 |
agcatctacatgttcaacttcctccaaaccaggacctccatcattacttccttctccaaagtaccttgtattaaaaaccaatttcctcatcaaattacaa |
27746796 |
T |
|
| Q |
148 |
caataatg |
155 |
Q |
| |
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|||||||| |
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| T |
27746797 |
caataatg |
27746804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 132
Target Start/End: Original strand, 27727133 - 27727190
Alignment:
| Q |
75 |
accaggccctccatccttcataccttttccaaagtaccttgtgttaaaaaacaatttc |
132 |
Q |
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|||||| |||||||| ||| | |||| ||||||||||||||| ||||||| ||||||| |
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| T |
27727133 |
accagggcctccatcattccttccttctccaaagtaccttgtattaaaaatcaatttc |
27727190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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